Search Results - "Bricker, P."

Rapid prototyping of arbitrary 2D and 3D wireframe DNA origami by Jun, Hyungmin, Wang, Xiao, Parsons, Molly F, Bricker, William P, John, Torsten, Li, Shanshan, Jackson, Steve, Chiu, Wah, Bathe, Mark

“…Wireframe DNA origami assemblies can now be programmed automatically from the top-down using simple wireframe target geometries, or meshes, in 2D and 3D, using…”
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Automated sequence design of 2D wireframe DNA origami with honeycomb edges by Jun, Hyungmin, Wang, Xiao, Bricker, William P., Bathe, Mark

“…Wireframe DNA origami has emerged as a powerful approach to fabricating nearly arbitrary 2D and 3D geometries at the nanometer-scale. Complex scaffold and…”
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Building an ab initio solvated DNA model using Euclidean neural networks by Lee, Alex J, Rackers, Joshua A, Pathak, Shivesh, Bricker, William P

“…Accurately modeling large biomolecules such as DNA from first principles is fundamentally challenging due to the steep computational scaling of ab initio…”
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Computational investigation of the impact of core sequence on immobile DNA four-way junction structure and dynamics by Adendorff, Matthew R, Tang, Guo Qing, Millar, David P, Bathe, Mark, Bricker, William P

“…Abstract Immobile four-way junctions (4WJs) are core structural motifs employed in the design of programmed DNA assemblies. Understanding the impact of…”
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Fine control of chlorophyll-carotenoid interactions defines the functionality of light-harvesting proteins in plants by Balevičius, Vytautas, Fox, Kieran F., Bricker, William P., Jurinovich, Sandro, Prandi, Ingrid G., Mennucci, Benedetta, Duffy, Christopher D. P.

“…Photosynthetic antenna proteins can be thought of as “programmed solvents”, which bind pigments at specific mutual orientations, thus tuning the overall…”
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An 'all pigment' model of excitation quenching in LHCII by Chmeliov, Jevgenij, Bricker, William P, Lo, Cynthia, Jouin, Elodie, Valkunas, Leonas, Ruban, Alexander V, Duffy, Christopher D P

“…The rapid, photoprotective down-regulation of plant light-harvesting in bright light proceeds via the non-photochemical quenching of chlorophyll excitation…”
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Non-radiative relaxation of photoexcited chlorophylls: theoretical and experimental study by Bricker, William P., Shenai, Prathamesh M., Ghosh, Avishek, Liu, Zhengtang, Enriquez, Miriam Grace M., Lambrev, Petar H., Tan, Howe-Siang, Lo, Cynthia S., Tretiak, Sergei, Fernandez-Alberti, Sebastian, Zhao, Yang

“…Nonradiative relaxation of high-energy excited states to the lowest excited state in chlorophylls marks the first step in the process of photosynthesis. We…”
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From Headwaters to Coast: Influence of Human Activities on Water Quality of the Potomac River Estuary by Bricker, Suzanne B, Rice, Karen C, Bricker, Owen P., III

“…The natural aging process of Chesapeake Bay and its tributary estuaries has been accelerated by human activities around the shoreline and within the watershed,…”
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Automated Sequence Design of 3D Polyhedral Wireframe DNA Origami with Honeycomb Edges by Jun, Hyungmin, Shepherd, Tyson R, Zhang, Kaiming, Bricker, William P, Li, Shanshan, Chiu, Wah, Bathe, Mark

“…3D polyhedral wireframe DNA nanoparticles (DNA-NPs) fabricated using scaffolded DNA origami offer complete and independent control over NP size, structure, and…”
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ALK Positive Anaplastic Large Cell Lymphoma With Pure Leptomeningeal Involvement: Unique Case Report and Review of the Literature by Bricker, P. C., Lesley, W. S., Surapaneni, R.

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Predicting accurate ab initio DNA electron densities with equivariant neural networks by Lee, Alex J., Rackers, Joshua A., Bricker, William P.

“…One of the fundamental limitations of accurately modeling biomolecules like DNA is the inability to perform quantum chemistry calculations on large molecular…”
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Applications of machine-learned electron densities of nucleic acids by Lee, Alex J., Rackers, Joshua A., Bricker, William P.

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Structure and conformational dynamics of scaffolded DNA origami nanoparticles by Pan, Keyao, Bricker, William P, Ratanalert, Sakul, Bathe, Mark

“…Synthetic DNA is a highly programmable nanoscale material that can be designed to self-assemble into 3D structures that are fully determined by underlying…”
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Internal Conversion and Vibrational Energy Redistribution in Chlorophyll A by Shenai, Prathamesh M, Fernandez-Alberti, Sebastian, Bricker, William P, Tretiak, Sergei, Zhao, Yang

“…We have computationally investigated the role of intramolecular vibrational modes in determining nonradiative relaxation pathways of photoexcited electronic…”
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Programming Structured DNA Assemblies to Probe Biophysical Processes by Wamhoff, Eike-Christian, Banal, James L, Bricker, William P, Shepherd, Tyson R, Parsons, Molly F, Veneziano, Rémi, Stone, Matthew B, Jun, Hyungmin, Wang, Xiao, Bathe, Mark

“…Structural DNA nanotechnology is beginning to emerge as a widely accessible research tool to mechanistically study diverse biophysical processes. Enabled by…”
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Efficient Pathways of Excitation Energy Transfer from Delocalized S 2 Excitons in the Peridinin–Chlorophyll a–Protein Complex by Bricker, William P, Lo, Cynthia S

“…Excitation energy transfer (EET) in peridinin–chlorophyll–protein (PCP) complexes is dominated by the S 1 → Q y pathway, but the high efficiencies cannot be…”
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Excitation Energy Transfer in the Peridinin-Chlorophyll a‑Protein Complex Modeled Using Configuration Interaction by Bricker, William P, Lo, Cynthia S

“…We modeled excitation energy transfer (EET) in the peridinin-chlorophyll a-protein (PCP) complex of dinoflagellate Amphidinium carterae to determine which…”
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Optical determination of the electronic coupling and intercalation geometry of thiazole orange homodimer in DNA by Cunningham, Paul D, Bricker, William P, Díaz, Sebastián A, Medintz, Igor L, Bathe, Mark, Melinger, Joseph S

“…Sequence-selective bis-intercalating dyes exhibit large increases in fluorescence in the presence of specific DNA sequences. This property makes this class of…”
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The proteolysis adaptor, NblA, binds to the N-terminus of β-phycocyanin: Implications for the mechanism of phycobilisome degradation by Nguyen, Amelia Y., Bricker, William P., Zhang, Hao, Weisz, Daniel A., Gross, Michael L., Pakrasi, Himadri B.

“…Phycobilisome (PBS) complexes are massive light-harvesting apparati in cyanobacteria that capture and funnel light energy to the photosystem. PBS complexes are…”
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Response to L. Land Comment on Bricker, Rice, Bricker (2014) From Headwaters to Coast: Influence of Human Activities on Water Quality of the Potomac River Estuary. Aquatic Geochemistry 20: 291–324 by Bricker, Suzanne B., Rice, Karen C., Bricker III, Owen P.

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