Search Results - "Bouvier, T"

Enzyme Function Initiative-Enzyme Similarity Tool (EFI-EST): A web tool for generating protein sequence similarity networks by Gerlt, John A., Bouvier, Jason T., Davidson, Daniel B., Imker, Heidi J., Sadkhin, Boris, Slater, David R., Whalen, Katie L.

“…The Enzyme Function Initiative, an NIH/NIGMS-supported Large-Scale Collaborative Project (EFI; U54GM093342; http://enzymefunction.org/), is focused on devising…”
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Key role of selective viral-induced mortality in determining marine bacterial community composition by Bouvier, T, del Giorgio, P.A

“…Viral infection is thought to play an important role in shaping bacterial community composition and diversity in aquatic ecosystems, but the strength of this…”
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Metabolic engineering of Pseudomonas putida for increased polyhydroxyalkanoate production from lignin by Salvachúa, Davinia, Rydzak, Thomas, Auwae, Raquel, De Capite, Annette, Black, Brenna A., Bouvier, Jason T., Cleveland, Nicholas S., Elmore, Joshua R., Huenemann, Jay D., Katahira, Rui, Michener, William E., Peterson, Darren J., Rohrer, Holly, Vardon, Derek R., Beckham, Gregg T., Guss, Adam M.

“…Summary Microbial conversion offers a promising strategy for overcoming the intrinsic heterogeneity of the plant biopolymer, lignin. Soil microbes that…”
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Captive bottlenose dolphins and killer whales harbor a species-specific skin microbiota that varies among individuals by Chiarello, M., Villéger, S., Bouvier, C., Auguet, J. C., Bouvier, T.

“…Marine animals surfaces host diverse microbial communities, which play major roles for host’s health. Most inventories of marine animal surface microbiota have…”
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Diversity and productivity peak at intermediate dispersal rate in evolving metacommunities by Venail, P. A., MacLean, R. C., Bouvier, T., Brockhurst, M. A., Hochberg, M. E., Mouquet, N.

“…Evolution of diversity A number of studies have demonstrated a positive relationship between species diversity and ecosystem productivity over short periods,…”
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Linking the lytic and lysogenic bacteriophage cycles to environmental conditions, host physiology and their variability in coastal lagoons by Maurice, C. F., Bouvier, C., de Wit, R., Bouvier, T.

“…Summary Changes in environmental conditions and prokaryote physiology can strongly affect the dynamics of both the lysogenic and lytic bacteriophage…”
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Enhanced ethanol formation by Clostridium thermocellum via pyruvate decarboxylase by Tian, Liang, Perot, Skyler J, Hon, Shuen, Zhou, Jilai, Liang, Xiaoyu, Bouvier, Jason T, Guss, Adam M, Olson, Daniel G, Lynd, Lee R

“…Pyruvate decarboxylase (PDC) is a well-known pathway for ethanol production, but has not been demonstrated for high titer ethanol production at temperatures…”
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Trophic interactions between viruses, bacteria and nanoflagellates under various nutrient conditions and simulated climate change by Bouvy, M., Bettarel, Y., Bouvier, C., Domaizon, I., Jacquet, S., Le Floc'h, E., Montanié, H., Mostajir, B., Sime-Ngando, T., Torréton, J. P., Vidussi, F., Bouvier, T.

“…Summary Population dynamics in the microbial food web are influenced by resource availability and predator/parasitism activities. Climatic changes, such as an…”
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Evolution of Enzymatic Activities in the Enolase Superfamily: Galactarate Dehydratase III from Agrobacterium tumefaciens C58 by Groninger-Poe, Fiona P, Bouvier, Jason T, Vetting, Matthew W, Kalyanaraman, Chakrapani, Kumar, Ritesh, Almo, Steven C, Jacobson, Matthew P, Gerlt, John A

“…The genome of Agrobacterium tumefaciens C58 encodes 12 members of the enolase superfamily (ENS), eight of which are members of the mandelate racemase (MR)…”
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Seasonal variations of phage life strategies and bacterial physiological states in three northern temperate lakes by Maurice, C.F, Bouvier, T, Comte, J, Guillemette, F, del Giorgio, P.A

“…The current consensus concerning the prevalence of lytic and lysogenic phage life cycles in aquatic systems is that the host physiological state may influence…”
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Phytoplankton distribution and productivity in a highly turbid, tropical coastal system (Bach Dang Estuary, Vietnam) by Rochelle-Newall, E.J., Chu, V.T., Pringault, O., Amouroux, D., Arfi, R., Bettarel, Y., Bouvier, T., Bouvier, C., Got, P., Nguyen, T.M.H., Mari, X., Navarro, P., Duong, T.N., Cao, T.T.T., Pham, T.T., Ouillon, S., Torréton, J.-P.

“…► Estuarine phytoplankton diversity is influenced by organometallic species concentration. ► Impact of inorganic or methylmercury and mono-, di-, and…”
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Microbial food web structural and functional responses to oyster and fish as top predators by Mostajir, Behzad, Roques, Cécile, Bouvier, Corinne, Bouvier, Thierry, Fouilland, Éric, Got, Patrice, Le Floc’h, Emilie, Nouguier, Jean, Mas, Sébastien, Sempéré, Richard, Sime-Ngando, Télesphore, Troussellier, Marc, Vidussi, Francesca

“…The impact of fish and oysters on components of the pelagic microbial food web (MFW) was studied in a 10 d mesocosm experiment using Mediterranean coastal…”
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Significant Change in Marine Plankton Structure and Carbon Production After the Addition of River Water in a Mesocosm Experiment by Fouilland, E., Trottet, A., Alves-de-Souza, C., Bonnet, D., Bouvier, T., Bouvy, M., Boyer, S., Guillou, L., Hatey, E., Jing, H., Leboulanger, C., Le Floc’h, E., Liu, H., Mas, S., Mostajir, B., Nouguier, J., Pecqueur, D., Rochelle-Newall, E., Roques, C., Salles, C., Tournoud, M.-G., Vasseur, C., Vidussi, F.

“…Rivers are known to be major contributors to eutrophication in marine coastal waters, but little is known on the short-term impact of freshwater surges on the…”
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Metabolic engineering of Pseudomonas putida for increased polyhydroxyalkanoate production from lignin by Salvachúa, Davinia, Rydzak, Thomas, Auwae, Raquel, De Capite, Annette, Black, Brenna A., Bouvier, Jason T., Cleveland, Nicholas S., Elmore, Joshua R., Furches, Anna, Huenemann, Jay D., Katahira, Rui, Michener, William E., Peterson, Darren J., Rohrer, Holly, Vardon, Derek R., Beckham, Gregg T., Guss, Adam M.

“…Corrigendum: In the originally published article by Salvachua et al. (2019), the author Anna Furches was accidentally omitted from the byline of manuscript,…”
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Compositional Changes in Free-Living Bacterial Communities along a Salinity Gradient in Two Temperate Estuaries by Bouvier, Thierry C., del Giorgio, Paul A.

“…There is now clear evidence for major differences in heterotrophic bacterial composition between freshwater and marine ecosystems. A fundamental question that…”
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Linking the Physiologic and Phylogenetic Successions in Free-Living Bacterial Communities along an Estuarine Salinity Gradient by del Giorgio, Paul A., Bouvier, Thierry C.

“…In this paper we assess whether the bacterial compositional succession that occurs along an estuarine salinity gradient is accompanied by changes in both…”
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Experimental Strategies for Functional Annotation and Metabolism Discovery: Targeted Screening of Solute Binding Proteins and Unbiased Panning of Metabolomes by Vetting, Matthew W, Al-Obaidi, Nawar, Zhao, Suwen, San Francisco, Brian, Kim, Jungwook, Wichelecki, Daniel J, Bouvier, Jason T, Solbiati, Jose O, Vu, Hoan, Zhang, Xinshuai, Rodionov, Dmitry A, Love, James D, Hillerich, Brandan S, Seidel, Ronald D, Quinn, Ronald J, Osterman, Andrei L, Cronan, John E, Jacobson, Matthew P, Gerlt, John A, Almo, Steven C

“…The rate at which genome sequencing data is accruing demands enhanced methods for functional annotation and metabolism discovery. Solute binding proteins…”
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Novel Metabolic Pathways and Regulons for Hexuronate Utilization in Proteobacteria by Bouvier, Jason T, Sernova, Natalia V, Ghasempur, Salehe, Rodionova, Irina A, Vetting, Matthew W, Al-Obaidi, Nawar F, Almo, Steven C, Gerlt, John A, Rodionov, Dmitry A

“…We used comparative genomics to reconstruct d-galacturonic and d-glucuronic acid catabolic pathways and associated transcriptional regulons involving the…”
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Functional assignment of multiple catabolic pathways for d-apiose by Carter, Michael S., Zhang, Xinshuai, Huang, Hua, Bouvier, Jason T., Francisco, Brian San, Vetting, Matthew W., Al-Obaidi, Nawar, Bonanno, Jeffrey B., Ghosh, Agnidipta, Zallot, Rémi G., Andersen, Harvey M., Almo, Steven C., Gerlt, John A.

“…Colocation of the genes encoding ABC, TRAP, and TCT transport systems and catabolic pathways for the transported ligand provides a strategy for discovering…”
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Galactaro δ‑Lactone Isomerase: Lactone Isomerization by a Member of the Amidohydrolase Superfamily by Bouvier, Jason T, Groninger-Poe, Fiona P, Vetting, Matthew, Almo, Steven C, Gerlt, John A

“…Agrobacterium tumefaciens strain C58 can utilize d-galacturonate as a sole source of carbon via a pathway in which the first step is oxidation of…”
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