Search Results - "Boulund, Fredrik"

Effects of sampling strategy and DNA extraction on human skin microbiome investigations by Bjerre, Rie Dybboe, Hugerth, Luisa Warchavchik, Boulund, Fredrik, Seifert, Maike, Johansen, Jeanne Duus, Engstrand, Lars

“…The human skin is colonized by a wide array of microorganisms playing a role in skin disorders. Studying the skin microbiome provides unique obstacles such as…”
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Shotgun metagenomics reveals a wide array of antibiotic resistance genes and mobile elements in a polluted lake in India by Bengtsson-Palme, Johan, Boulund, Fredrik, Fick, Jerker, Kristiansson, Erik, Larsson, D G Joakim

“…There is increasing evidence for an environmental origin of many antibiotic resistance genes. Consequently, it is important to identify environments of…”
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Identification and reconstruction of novel antibiotic resistance genes from metagenomes by Berglund, Fanny, Österlund, Tobias, Boulund, Fredrik, Marathe, Nachiket P, Larsson, D G Joakim, Kristiansson, Erik

“…Environmental and commensal bacteria maintain a diverse and largely unknown collection of antibiotic resistance genes (ARGs) that, over time, may be mobilized…”
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Typing and Characterization of Bacteria Using Bottom-up Tandem Mass Spectrometry Proteomics by Boulund, Fredrik, Karlsson, Roger, Gonzales-Siles, Lucia, Johnning, Anna, Karami, Nahid, AL-Bayati, Omar, Åhrén, Christina, Moore, Edward R.B., Kristiansson, Erik

“…Methods for rapid and reliable microbial identification are essential in modern healthcare. The ability to detect and correctly identify pathogenic species and…”
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Proteotyping bacteria: Characterization, differentiation and identification of pneumococcus and other species within the Mitis Group of the genus Streptococcus by tandem mass spectrometry proteomics by Karlsson, Roger, Gonzales-Siles, Lucia, Gomila, Margarita, Busquets, Antonio, Salvà-Serra, Francisco, Jaén-Luchoro, Daniel, Jakobsson, Hedvig E, Karlsson, Anders, Boulund, Fredrik, Kristiansson, Erik, Moore, Edward R B

“…A range of methodologies may be used for analyzing bacteria, depending on the purpose and the level of resolution needed. The capability for recognition of…”
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Computational discovery and functional validation of novel fluoroquinolone resistance genes in public metagenomic data sets by Boulund, Fredrik, Berglund, Fanny, Flach, Carl-Fredrik, Bengtsson-Palme, Johan, Marathe, Nachiket P, Larsson, D G Joakim, Kristiansson, Erik

“…Fluoroquinolones are broad-spectrum antibiotics used to prevent and treat a wide range of bacterial infections. Plasmid-mediated qnr genes provide resistance…”
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Dysbiosis of the Human Oral Microbiome During the Menstrual Cycle and Vulnerability to the External Exposures of Smoking and Dietary Sugar by Bostanci, Nagihan, Krog, Maria Christine, Hugerth, Luisa W, Bashir, Zahra, Fransson, Emma, Boulund, Fredrik, Belibasakis, Georgios N, Wannerberger, Kristin, Engstrand, Lars, Nielsen, Henriette Svarre, Schuppe-Koistinen, Ina

“…Physiological hormonal fluctuations exert endogenous pressures on the structure and function of the human microbiome. As such, the menstrual cycle may…”
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Conjugative transfer of multi-drug resistance IncN plasmids from environmental waterborne bacteria to Escherichia coli by Guzman-Otazo, Jessica, Joffré, Enrique, Agramont, Jorge, Mamani, Nataniel, Jutkina, Jekaterina, Boulund, Fredrik, Hu, Yue O. O., Jumilla-Lorenz, Daphne, Farewell, Anne, Larsson, D. G. Joakim, Flach, Carl-Fredrik, Iñiguez, Volga, Sjöling, Åsa

“…Watersheds contaminated with municipal, hospital, and agricultural residues are recognized as reservoirs for bacteria carrying antibiotic resistance genes…”
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Cohort profile: the Swedish Maternal Microbiome project (SweMaMi) – assessing the dynamic associations between the microbiome and maternal and neonatal adverse events by Fransson, Emma, Gudnadottir, Unnur, Hugerth, Luisa W, Itzel, Eva Wiberg, Hamsten, Marica, Boulund, Fredrik, Pennhag, Alexandra, Du, Juan, Schuppe-Koistinen, Ina, Brusselaers, Nele, Engstrand, Lars

“…PurposeThe Swedish Maternal Microbiome (SweMaMi) project was initiated to better understand the dynamics of the microbiome in pregnancy, with longitudinal…”
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The protective role of commensal gut microbes and their metabolites against bacterial pathogens by Cheng, Liqin, Correia, Mário S P, Higdon, Shawn M, Romero Garcia, Fabricio, Tsiara, Ioanna, Joffré, Enrique, Sjöling, Åsa, Boulund, Fredrik, Norin, Elisabeth Lissa, Engstrand, Lars, Globisch, Daniel, Du, Juan

“…Multidrug-resistant microorganisms have become a major public health concern around the world. The gut microbiome is a gold mine for bioactive compounds that…”
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Investigations of microbiota composition and neuroactive pathways in association with symptoms of stress and depression in a cohort of healthy women by Bashir, Zahra, Hugerth, Luisa W, Krog, Maria Christine, Prast-Nielsen, Stefanie, Edfeldt, Gabriella, Boulund, Fredrik, Schacht, Simon Rønnow, Tetens, Inge, Engstrand, Lars, Schuppe-Koistinen, Ina, Fransson, Emma, Nielsen, Henriette Svarre

“…Despite mounting evidence of gut-brain involvement in psychiatric conditions, functional data remain limited, and analyses of other microbial niches, such as…”
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Novel strain of Pseudoruminococcus massiliensis possesses traits important in gut adaptation and host-microbe interactions by Hiippala, Kaisa, Khan, Imran, Ronkainen, Aki, Boulund, Fredrik, Vähä-Mäkilä, Helena, Suutarinen, Maiju, Seifert, Maike, Engstrand, Lars, Satokari, Reetta

“…Fecal microbiota transplantation (FMT) is an efficient treatment for recurrent infection and currently investigated as a treatment for other intestinal and…”
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Transient colonizing microbes promote gut dysbiosis and functional impairment by Lee, Sunjae, Meslier, Victoria, Bidkhori, Gholamreza, Garcia-Guevara, Fernando, Etienne-Mesmin, Lucie, Clasen, Frederick, Park, Junseok, Plaza Oñate, Florian, Cai, Haizhuang, Le Chatelier, Emmanuelle, Pons, Nicolas, Pereira, Marcela, Seifert, Maike, Boulund, Fredrik, Engstrand, Lars, Lee, Doheon, Proctor, Gordon, Mardinoglu, Adil, Blanquet-Diot, Stéphanie, Moyes, David, Almeida, Mathieu, Ehrlich, S. Dusko, Uhlen, Mathias, Shoaie, Saeed

“…Species composition of the healthy adult gut microbiota tends to be stable over time. Destabilization of the gut microbiome under the influence of different…”
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A novel method to discover fluoroquinolone antibiotic resistance (qnr) genes in fragmented nucleotide sequences by Boulund, Fredrik, Johnning, Anna, Pereira, Mariana Buongermino, Larsson, D G Joakim, Kristiansson, Erik

“…Broad-spectrum fluoroquinolone antibiotics are central in modern health care and are used to treat and prevent a wide range of bacterial infections. The…”
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Draft Genome Sequence of Extended-Spectrum-β-Lactamase-Producing Escherichia coli Strain CCUG 62462, Isolated from a Urine Sample by Johnning, Anna, Jakobsson, Hedvig E, Boulund, Fredrik, Salvà-Serra, Francisco, Moore, Edward R B, Åhrén, Christina, Karami, Nahid, Kristiansson, Erik

“…The draft genome sequence has been determined for an extended-spectrum-β-lactamase (ESBL)-producing (bla ) Escherichia coli strain (CCUG 62462), composed of…”
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Draft Genome Sequences of Six Strains of Streptococcus pneumoniae from Serotypes 5, 6A, 6B, 18C, 19A, and 23F by Jakobsson, Hedvig E, Salvà-Serra, Francisco, Thorell, Kaisa, Karlsson, Roger, Gonzales-Silès, Lucia, Boulund, Fredrik, Engstrand, Lars, Kristiansson, Erik, Moore, Edward R B

“…is a pathogenic bacterium found most commonly in the respiratory tract of humans and is a common cause of pneumonia and bacterial meningitis. Here, we report…”
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Draft Genome Sequence of Moraxella catarrhalis Type Strain CCUG 353T by Jakobsson, Hedvig E, Salvà-Serra, Francisco, Thorell, Kaisa, Gonzales-Siles, Lucia, Boulund, Fredrik, Karlsson, Roger, Sikora, Per, Engstrand, Lars, Kristiansson, Erik, Moore, Edward R B

“…Moraxella catarrhalis is a Gram-negative commensal and pathogenic bacterium found in the human respiratory tract. It is associated with otitis media and…”
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Draft Genome Sequence of Streptococcus gordonii Type Strain CCUG 33482T by Salvà-Serra, Francisco, Jakobsson, Hedvig E, Thorell, Kaisa, Gonzales-Siles, Lucia, Hallbäck, Erika T, Jaén-Luchoro, Daniel, Boulund, Fredrik, Sikora, Per, Karlsson, Roger, Svensson, Liselott, Bennasar, Antoni, Engstrand, Lars, Kristiansson, Erik, Moore, Edward R B

“…Streptococcus gordoniitype strain CCUG 33482(T)is a member of theStreptococcus mitisgroup, isolated from a case of subacute bacterial endocarditis. Here, we…”
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The Prevotella copri Complex Comprises Four Distinct Clades Underrepresented in Westernized Populations by Tett, Adrian, Huang, Kun D., Asnicar, Francesco, Fehlner-Peach, Hannah, Pasolli, Edoardo, Karcher, Nicolai, Armanini, Federica, Manghi, Paolo, Bonham, Kevin, Zolfo, Moreno, De Filippis, Francesca, Magnabosco, Cara, Bonneau, Richard, Lusingu, John, Amuasi, John, Reinhard, Karl, Rattei, Thomas, Boulund, Fredrik, Engstrand, Lars, Zink, Albert, Collado, Maria Carmen, Littman, Dan R., Eibach, Daniel, Ercolini, Danilo, Rota-Stabelli, Omar, Huttenhower, Curtis, Maixner, Frank, Segata, Nicola

“…Prevotella copri is a common human gut microbe that has been both positively and negatively associated with host health. In a cross-continent meta-analysis…”
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Dynamics of the normal gut microbiota: A longitudinal one-year population study in Sweden by Olsson, Lisa M, Boulund, Fredrik, Nilsson, Staffan, Khan, Muhammad Tanweer, Gummesson, Anders, Fagerberg, Linn, Engstrand, Lars, Perkins, Rosie, Uhlén, Mathias, Bergström, Göran, Tremaroli, Valentina, Bäckhed, Fredrik

“…Temporal dynamics of the gut microbiota potentially limit the identification of microbial features associated with health status. Here, we used whole-genome…”
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