Search Results - "Borer, P N"

Structure of the HIV-1 Nucleocapsid Protein Bound to the SL3 ψ-RNA Recognition Element by de Guzman, Roberto N., Wu, Zheng Rong, Stalling, Chelsea C., Pappalardo, Lucia, Borer, Philip N., Summers, Michael F.

“…The three-dimensional structure of the human immunodeficiency virus-type 1 (HIV-1) nucleocapsid protein (NC) bound to the SL3 stem-loop recognition element of…”
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Revised UV extinction coefficients for nucleoside‐5′‐monophosphates and unpaired DNA and RNA by Cavaluzzi, Michael J., Borer, Philip N.

“…Ultraviolet absorption provides the nearly universal basis for determining concentrations of nucleic acids. Values for the UV extinction coefficients of DNA…”
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Structure of SL4 RNA from the HIV-1 Packaging Signal by Kerwood, Deborah J, Cavaluzzi, Michael J, Borer, Philip N

“…The NMR-based structure is described for an RNA model of stem−loop 4 (SL4) from the HIV-1 major packaging domain. The GAGA tetraloop adopts a conformation…”
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Accurate nucleic acid concentrations by nuclear magnetic resonance by Cavaluzzi, M.J., Kerwood, D.J., Borer, P.N.

“…Determination of the concentration of biochemical samples often yields values with uncertainties of 10–20% or more. This paper details a protocol for use with…”
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Affinities of Packaging Domain Loops in HIV-1 RNA for the Nucleocapsid Protein by Shubsda, Michael F, Paoletti, Andrew C, Hudson, Bruce S, Borer, Philip N

“…To design anti-nucleocapsid drugs, it is useful to know the affinities the protein has for its natural substrates under physiological conditions. Dissociation…”
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Affinities of the Nucleocapsid Protein for Variants of SL3 RNA in HIV-1 by Paoletti, Andrew C, Shubsda, Michael F, Hudson, Bruce S, Borer, Philip N

“…Efficient packaging of genomic RNA into new HIV-1 virus particles requires that nucleocapsid domains of precursor proteins bind the SL3 tetraloop…”
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Stem of SL1 RNA in HIV-1: structure and nucleocapsid protein binding for a 1 x 3 internal loop by Yuan, YiQiong, Kerwood, Deborah J, Paoletti, Andrew C, Shubsda, Michael F, Borer, Philip N

“…The 5'-leader of HIV-1 RNA controls many viral functions. Nucleocapsid (NC) domains of gag-precursor proteins select genomic RNA for packaging by binding…”
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Enzymatic and NMR analysis of oligoribonucleotides synthesized with 2'-tert-butyldimethylsilyl protected cyanoethylphosphoramidite monomers by YU YING WANG, LYTTLE, M. H, BORER, P. N

“…The regioisomeric integrity of the internucleotide phosphate linkage in synthetic RNA using 2'-tert-butyldimethylsilyl protection was examined using enzymatic…”
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Three-dimensional folding of an RNA hairpin required for packaging HIV-1 by Pappalardo, L, Kerwood, D J, Pelczer, I, Borer, P N

“…An NMR-based structure is presented for a 20 mer hairpin model of the SL3 stem-loop from the HIV-1 packaging signal. The stem has an A-family structure…”
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Actinomycin D induced DNase I hypersensitivity and asymmetric structure transmission in a DNA hexadecamer by BISHOP, K. .D, BORER, P. N, YAO-QI HUANG, LANE, M. J

“…DNase I cleavage rates and nmr chemical shifts are shown to change for DNA sequences distal to an intercalated actinomycin D molecule in a duplex hexadecamer…”
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NMR studies of pig gastric microsomal H+,K+-ATPase and phospholipid dynamics. Effects of ethanol perturbation by Bailey, R E, Nandi, J, Levine, R A, Ray, T K, Borer, P N, Levy, G C

“…The effects of ethanol on the gastric H+,K+-ATPase activity and the degree of mobility of various microsomal phospholipids were assessed using 31P and 1H NMR…”
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Actinomycin D induced DNase I cleavage enhancement caused by sequence specific propagation of an altered DNA structure by YAO-QI HUANG, REHFUSS, R. P, LAPLANTE, S. R, BOUDREAU, E, BORER, P. N, LANE, M. J

“…Two DNA hexadecamers containing one central 5'-GC-3' base step have been examined by footprinting methodology in the presence and absence of actinomycin D. The…”
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Proton NMR and Structural Features of a 24-Nucleotide RNA Hairpin by Borer, Philip N, Lin, Yong, Wang, Sophia, Roggenbuck, Mark W, Gott, Jonatha M, Uhlenbeck, Olke C, Pelczer, Istvan

“…The three-dimensional conformation of a 24-nucleotide variant of the RNA binding sequence for the coat protein of bacteriophage R17 has been analyzed using…”
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Actinomycin D facilitates transition of AT domains in molecules of sequence (AT)nAGCT(AT)n to a DNAse I detectable alternating structure by LANE, M. J, LAPLANTE, S, REHFUSS, R. P, BORER, P. N, CANTOR, C. R

“…The interaction of actinomycin D with (AT)nAGCT(AT)n (where n = 2, 3, or 4) was investigated using a combination of imino proton NMR and DNAse I digestion. The…”
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Analysis of DNA and DNA-lexitropsin interaction using multinuclear NMR and molecular dynamics by Borer, P N, LaPlante, S R, Wang, S, Levy, G C

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Effects of ethanol on gastric epithelial cell phospholipid dynamics and cellular function by Bailey, R E, Levine, R A, Nandi, J, Schwartzel, Jr, E H, Beach, D H, Borer, P N, Levy, G C

“…The lipid profile of isolated gastric superficial epithelial cells (SEC) was evaluated by proton nuclear magnetic resonance spectroscopy (1H-NMR). The most…”
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Computer-assisted assignment of peptides with non-standard amino acids by Xu, J, Weber, P L, Borer, P N

“…A comprehensive peptide assignment program and its application to a cyclic peptide, cyclosporin A, are presented in this paper. A group of graph theoretical…”
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Nearest-neighbor effects in the structure and function of nucleic acids by Bubienko, E, Cruz, P, Thomason, J F, Borer, P N

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13C-NMR of the Deoxyribose Sugars in Four DNA Oligonucleotide Duplexes: Assignment and Structural Features by LaPlante, Steven R, Zanatta, Nilo, Hakkinen, Anna, Wang, Andrew H.-J, Borer, Philip N

“…Natural-abundance 13C-NMR spectra have been obtained for four self-complementary DNA oligonucleotides: [d(TAGCGCTA)]2, [d(GGTATACC)]2, [d(CG)3]2, and…”
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Using maximum likelihood spectral deconvolution in multidimensional nuclear magnetic resonance by Borer, P N, Levy, G C

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