Search Results - "Bonnet, Eric"

Integrative multi-omics module network inference with Lemon-Tree by Bonnet, Eric, Calzone, Laurence, Michoel, Tom

“…Module network inference is an established statistical method to reconstruct co-expression modules and their upstream regulatory programs from integrated…”
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The genome of Tetranychus urticae reveals herbivorous pest adaptations by Grbić, Miodrag, Van Leeuwen, Thomas, Clark, Richard M., Rombauts, Stephane, Rouzé, Pierre, Grbić, Vojislava, Osborne, Edward J., Dermauw, Wannes, Thi Ngoc, Phuong Cao, Ortego, Félix, Hernández-Crespo, Pedro, Diaz, Isabel, Martinez, Manuel, Navajas, Maria, Sucena, Élio, Magalhães, Sara, Nagy, Lisa, Pace, Ryan M., Djuranović, Sergej, Smagghe, Guy, Iga, Masatoshi, Christiaens, Olivier, Veenstra, Jan A., Ewer, John, Villalobos, Rodrigo Mancilla, Hutter, Jeffrey L., Hudson, Stephen D., Velez, Marisela, Yi, Soojin V., Zeng, Jia, Pires-daSilva, Andre, Roch, Fernando, Cazaux, Marc, Navarro, Marie, Zhurov, Vladimir, Acevedo, Gustavo, Bjelica, Anica, Fawcett, Jeffrey A., Bonnet, Eric, Martens, Cindy, Baele, Guy, Wissler, Lothar, Sanchez-Rodriguez, Aminael, Tirry, Luc, Blais, Catherine, Demeestere, Kristof, Henz, Stefan R., Gregory, T. Ryan, Mathieu, Johannes, Verdon, Lou, Farinelli, Laurent, Schmutz, Jeremy, Lindquist, Erika, Feyereisen, René, Van de Peer, Yves

“…The spider mite Tetranychus urticae is a cosmopolitan agricultural pest with an extensive host plant range and an extreme record of pesticide resistance. Here…”
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Generic eukaryotic core promoter prediction using structural features of DNA by Abeel, Thomas, Saeys, Yvan, Bonnet, Eric, Rouzé, Pierre, Van de Peer, Yves

“…Despite many recent efforts, in silico identification of promoter regions is still in its infancy. However, the accurate identification and delineation of…”
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zt : A Software Tool for Simple and Partial Mantel Tests by Bonnet, Eric, Van de Peer, Yves

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Performance comparison of three DNA extraction kits on human whole-exome data from formalin-fixed paraffin-embedded normal and tumor samples by Bonnet, Eric, Moutet, Marie-Laure, Baulard, Céline, Bacq-Daian, Delphine, Sandron, Florian, Mesrob, Lilia, Fin, Bertrand, Delépine, Marc, Palomares, Marie-Ange, Jubin, Claire, Blanché, Hélène, Meyer, Vincent, Boland, Anne, Olaso, Robert, Deleuze, Jean-François

“…Next-generation sequencing (NGS) studies are becoming routinely used for the detection of novel and clinically actionable DNA variants at a pangenomic scale…”
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Panton–Valentine leukocidin-positive Staphylococcus aureus: a position statement from the International Society of Chemotherapy by Saeed, Kordo, Gould, Ian, Esposito, Silvano, Ahmad-Saeed, Nusreen, Ahmed, Salman Shaheer, Alp, Emine, Bal, Abhijit M., Bassetti, Matteo, Bonnet, Eric, Chan, Monica, Coombs, Geoffrey, Dancer, Stephanie J., David, Michael Z., De Simone, Giuseppe, Dryden, Matthew, Guardabassi, Luca, Hanitsch, Leif G., Hijazi, Karolin, Krüger, Renate, Lee, Andie, Leistner, Rasmus, Pagliano, Pasquale, Righi, Elda, Schneider-Burrus, Sylke, Skov, Robert Leo, Tattevin, Pierre, Van Wamel, Willem, Vos, Margreet C., Voss, Andreas

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Systematic analysis of TruSeq, SMARTer and SMARTer Ultra-Low RNA-seq kits for standard, low and ultra-low quantity samples by Palomares, Marie-Ange, Dalmasso, Cyril, Bonnet, Eric, Derbois, Céline, Brohard-Julien, Solène, Ambroise, Christophe, Battail, Christophe, Deleuze, Jean-François, Olaso, Robert

“…High-throughput RNA-sequencing has become the gold standard method for whole-transcriptome gene expression analysis, and is widely used in numerous…”
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Comprehensive Catalog of Variants Potentially Associated with Hidradenitis Suppurativa, Including Newly Identified Variants from a Cohort of 100 Patients by Muret, Kévin, Le Goff, Vincent, Dandine-Roulland, Claire, Hotz, Claire, Jean-Louis, Francette, Boisson, Bertrand, Mesrob, Lilia, Sandron, Florian, Daian, Delphine, Olaso, Robert, Le Floch, Edith, Meyer, Vincent, Wolkenstein, Pierre, Casanova, Jean-Laurent, Lévy, Yves, Bonnet, Eric, Deleuze, Jean-François, Hüe, Sophie

“…Hidradenitis suppurativa (HS) is a chronic skin disease characterized by painful, recurrent abscesses, nodules, and scarring, primarily in skin folds. The…”
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Single cell transcriptome sequencing of stimulated and frozen human peripheral blood mononuclear cells by Derbois, Céline, Palomares, Marie-Ange, Deleuze, Jean-François, Cabannes, Eric, Bonnet, Eric

“…Peripheral blood mononuclear cells (PBMCs) are blood cells that are a critical part of the immune system used to fight off infection, defending our bodies from…”
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Microbiological Profile of Instrumented Spinal Infections: 10-Year Study at a French Spine Center by Reissier, Sophie, Couzigou, Carine, Courseau, Romain, Aubert, Elise, Le Monnier, Alban, Bonnet, Eric, Upex, Peter, Moreau, Pierre-Emmanuel, Riouallon, Guillaume, Lourtet-Hascoët, Julie

“…The objective was to compare the microbiological characteristics and treatment of early and late surgical site infections (SSIs) in instrumented spinal…”
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A Tandem Affinity Purification-based Technology Platform to Study the Cell Cycle Interactome in Arabidopsis thaliana by Van Leene, Jelle, Stals, Hilde, Eeckhout, Dominique, Persiau, Geert, Van De Slijke, Eveline, Van Isterdael, Gert, De Clercq, Annelies, Bonnet, Eric, Laukens, Kris, Remmerie, Noor, Henderickx, Kim, De Vijlder, Thomas, Abdelkrim, Azmi, Pharazyn, Anne, Van Onckelen, Harry, Inzé, Dirk, Witters, Erwin, De Jaeger, Geert

“…Defining protein complexes is critical to virtually all aspects of cell biology because many cellular processes are regulated by stable protein complexes, and…”
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Module network inference from a cancer gene expression data set identifies microRNA regulated modules by Bonnet, Eric, Tatari, Marianthi, Joshi, Anagha, Michoel, Tom, Marchal, Kathleen, Berx, Geert, Van de Peer, Yves

“…MicroRNAs (miRNAs) are small RNAs that recognize and regulate mRNA target genes. Multiple lines of evidence indicate that they are key regulators of numerous…”
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DEVEA: an interactive shiny application for Differential Expression analysis, data Visualization and Enrichment Analysis of transcriptomics data [version 2; peer review: 2 approved] by Riquelme-Perez, Miriam, Perez-Sanz, Fernando, Deleuze, Jean-François, Escartin, Carole, Bonnet, Eric, Brohard, Solène

“…We are at a time of considerable growth in transcriptomics studies and subsequent in silico analysis. RNA sequencing (RNA-Seq) is the most widely used approach…”
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New and emerging agents in the management of lipodystrophy in HIV-infected patients by Bonnet, Eric

“…Lipodystrophy remains a major long-term complication in human immunodeficiency virus-infected patients under antiretroviral (ARV) therapy. Patients may present…”
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Endocarditis due to Gram Positive Anaerobic Cocci: First report of Peptoniphilus indolicus endocarditis and literature review by Lourtet-Hascoet, Julie, Hascoet, Sébastien, Galinier, Jean-Louis, Fontenel, Benoît, Monteil, Benoît, Bonnet, Eric

“…•Gram positive anaerobes are involved in less than 1% of Infective Endocarditis (IE).•We reported the first case of P. indolicus IE after transcatheter valve…”
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Risk factors for serotype 19A carriage after introduction of 7-valent pneumococcal vaccination by Cohen, Robert, Levy, Corinne, Bonnet, Eric, Thollot, Franck, Boucherat, Michel, Fritzell, Bernard, Derkx, Véronique, Bingen, Edouard, Varon, Emmanuelle

“…After the implementation of 7-valent pneumococcal conjugate vaccine (PCV7), in several countries, serotype 19A is now the serotype most frequently involved in…”
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Correction to: Meeting report from the fourth meeting of the Computational Modeling in Biology Network (COMBINE) by Waltemath, Dagmar, Bergmann, Frank T, Chaouiya, Claudine, Czauderna, Tobias, Gleeson, Padraig, Goble, Carole, Golebiewski, Martin, Hucka, Michael, Juty, Nick, Krebs, Olga, Le Novère, Nicolas, Mi, Huaiyu, Moraru, Ion I, Myers, Chris J, Nickerson, David, Olivier, Brett G, Rodriguez, Nicolas, Schreiber, Falk, Smith, Lucian, Zhang, Fengkai, Bonnet, Eric

“…[This corrects the article DOI: 10.4056/sigs.5279417.]…”
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An interaction between apo C-III variants and protease inhibitors contributes to high triglyceride/low HDL levels in treated HIV patients by FAUVEL, Josette, BONNET, Eric, RUIDAVETS, Jean-Bernard, FERRIERES, Jean, TOFFOLETTI, Arlette, MASSIP, Patrice, CHAP, Hugues, PERRET, Bertrand

“…Long-term therapy with protease inhibitors (PI) is associated with hypertriglyceridaemia, low high-density lipoprotein (HDL) levels and accumulation of…”
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Impact of genetic polymorphisms on the risk of lipid disorders in patients on anti-HIV therapy by Bonnet, Eric, Genoux, Annelise, Bernard, Jacques, Fauvel, Josette, Massip, Patrice, Perret, Bertrand

“…Active anti-HIV therapy can induce hypertriglyceridemia, low high-density lipoprotein (HDL) and insulin resistance, eventually accompanied by clinical…”
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TAPIR, a web server for the prediction of plant microRNA targets, including target mimics by Bonnet, Eric, He, Ying, Billiau, Kenny, Van de Peer, Yves

“…We present a new web server called TAPIR, designed for the prediction of plant microRNA targets. The server offers the possibility to search for plant miRNA…”
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