Search Results - "Bolotin, A"

MiXCR: software for comprehensive adaptive immunity profiling by Bolotin, Dmitriy A, Poslavsky, Stanislav, Mitrophanov, Igor, Shugay, Mikhail, Mamedov, Ilgar Z, Putintseva, Ekaterina V, Chudakov, Dmitriy M

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VDJtools: Unifying Post-analysis of T Cell Receptor Repertoires by Shugay, Mikhail, Bagaev, Dmitriy V, Turchaninova, Maria A, Bolotin, Dmitriy A, Britanova, Olga V, Putintseva, Ekaterina V, Pogorelyy, Mikhail V, Nazarov, Vadim I, Zvyagin, Ivan V, Kirgizova, Vitalina I, Kirgizov, Kirill I, Skorobogatova, Elena V, Chudakov, Dmitriy M

“…Despite the growing number of immune repertoire sequencing studies, the field still lacks software for analysis and comprehension of this high-dimensional…”
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Towards error-free profiling of immune repertoires by Shugay, Mikhail, Britanova, Olga V, Merzlyak, Ekaterina M, Turchaninova, Maria A, Mamedov, Ilgar Z, Tuganbaev, Timur R, Bolotin, Dmitriy A, Staroverov, Dmitry B, Putintseva, Ekaterina V, Plevova, Karla, Linnemann, Carsten, Shagin, Dmitriy, Pospisilova, Sarka, Lukyanov, Sergey, Schumacher, Ton N, Chudakov, Dmitriy M

“…A two-step error correction process for high throughput–sequenced T- and B-cell receptors allows the elimination of most errors while not diminishing the…”
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Next generation sequencing for TCR repertoire profiling: Platform‐specific features and correction algorithms by Bolotin, Dmitry A., Mamedov, Ilgar Z., Britanova, Olga V., Zvyagin, Ivan V., Shagin, Dmitriy, Ustyugova, Svetlana V., Turchaninova, Maria A., Lukyanov, Sergey, Lebedev, Yury B., Chudakov, Dmitriy M.

“…The TCR repertoire is a mirror of the human immune system that reflects processes caused by infections, cancer, autoimmunity, and aging. Next generation…”
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Distinctive properties of identical twins' TCR repertoires revealed by high-throughput sequencing by Zvyagin, Ivan V., Pogorelyy, Mikhail V., Ivanova, Marina E., Komech, Ekaterina A., Shugay, Mikhail, Bolotin, Dmitry A., Shelenkov, Andrey A., Kurnosov, Alexey A., Staroverov, Dmitriy B., Chudakov, Dmitriy M., Lebedev, Yuri B., Mamedov, Ilgar Z.

“…Adaptive immunity in humans is provided by hypervariable Ig-like molecules on the surface of B and T cells. The final set of these molecules in each organism…”
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Convergence, plasticity, and tissue residence of regulatory T cell response via TCR repertoire prism by Nakonechnaya, Tatyana O, Moltedo, Bruno, Putintseva, Ekaterina V, Leyn, Sofya, Bolotin, Dmitry A, Britanova, Olga V, Shugay, Mikhail, Chudakov, Dmitriy M

“…Suppressive function of regulatory T cells (Treg) is dependent on signaling of their antigen receptors triggered by cognate self, dietary, or microbial…”
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complete genome sequence of Lactobacillus bulgaricus reveals extensive and ongoing reductive evolution by Guchte, M. van de, Penaud, S, Grimaldi, C, Barbe, V, Bryson, K, Nicolas, P, Robert, C, Oztas, S, Mangenot, S, Couloux, A

“…Lactobacillus delbrueckii ssp. bulgaricus (L. bulgaricus) is a representative of the group of lactic acid-producing bacteria, mainly known for its worldwide…”
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The Complete Genome Sequence of the Lactic Acid Bacterium Lactococcus lactis ssp. lactis IL1403 by Bolotin, A., Wincker, P., Mauger, S., Jaillon, O., Malarme, K., Weissenbach, J., Ehrlich, S. D., Sorokin, A.

“…Lactococcus lactis is a nonpathogenic AT-rich gram-positive bacterium closely related to the genus Streptococcus andis the most commonly used cheese starter…”
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Preparing unbiased T-cell receptor and antibody cDNA libraries for the deep next generation sequencing profiling by Mamedov, Ilgar Z, Britanova, Olga V, Zvyagin, Ivan V, Turchaninova, Maria A, Bolotin, Dmitriy A, Putintseva, Ekaterina V, Lebedev, Yuriy B, Chudakov, Dmitriy M

“…High-throughput sequencing has the power to reveal the nature of adaptive immunity as represented by the full complexity of T-cell receptor (TCR) and antibody…”
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Classifying freshwater salinity regimes in central and western U.S. streams and rivers by Bolotin, Lauren A., Summers, Betsy M., Savoy, Philip, Blaszczak, Joanna R.

“…Freshwater salinization of rivers is occurring across the globe because of nonpoint source loading of salts from anthropogenic activities such as agriculture,…”
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Application of nonsense-mediated primer exclusion (NOPE) for preparation of unique molecular barcoded libraries by Shagin, Dmitriy A, Turchaninova, Maria A, Shagina, Irina A, Shugay, Mikhail, Zaretsky, Andrew R, Zueva, Olga I, Bolotin, Dmitriy A, Lukyanov, Sergey, Chudakov, Dmitriy M

“…Recently we proposed efficient method to exclude undesirable primers at any stage of amplification reaction, here termed NOPE (NOnsense-mediated Primer…”
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Longitudinal Patterns of Drug Injection Behavior in the ALIVE Study Cohort,1988–2000: Description and Determinants by Galai, N., Safaeian, M., Vlahov, D., Bolotin, A., Celentano, D. D.

“…The objective of this study was to characterize longitudinal patterns of drug injection behavior for individuals and to identify their early determinants…”
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Huge Overlap of Individual TCR Beta Repertoires by Shugay, Mikhail, Bolotin, Dmitriy A, Putintseva, Ekaterina V, Pogorelyy, Mikhail V, Mamedov, Ilgar Z, Chudakov, Dmitriy M

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A hydrologic signature approach to analysing wildfire impacts on overland flow by Bolotin, L. A., McMillan, H.

“…Post‐fire flooding and debris flows are often triggered by increased overland flow resulting from wildfire impacts on soil infiltration capacity and surface…”
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Probiotics improve bowel movements in hospitalized elderly patients — The proage study by Zaharoni, Hilla, Rimon, E., Vardi, H., Friger, M., Bolotin, A., Shahar, D. R.

“…Objective To determine the impact of probiotics on the prevention of problems with bowel movements malnutrition and infection. Design A randomized,…”
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High-throughput identification of antigen-specific TCRs by TCR gene capture by Linnemann, Carsten, Heemskerk, Bianca, Kvistborg, Pia, Kluin, Roelof J C, Bolotin, Dmitriy A, Chen, Xiaojing, Bresser, Kaspar, Nieuwland, Marja, Schotte, Remko, Michels, Samira, Gomez-Eerland, Raquel, Jahn, Lorenz, Hombrink, Pleun, Legrand, Nicolas, Shu, Chengyi Jenny, Mamedov, Ilgar Z, Velds, Arno, Blank, Christian U, Haanen, John B A G, Turchaninova, Maria A, Kerkhoven, Ron M, Spits, Hergen, Hadrup, Sine Reker, Heemskerk, Mirjam H M, Blankenstein, Thomas, Chudakov, Dmitriy M, Bendle, Gavin M, Schumacher, Ton N M

“…The lack of robust and high-throughput technologies to analyze the human TCR repertoire has been a bottleneck in the analysis of human T cell responses…”
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Mother and child T cell receptor repertoires: deep profiling study by Putintseva, Ekaterina V, Britanova, Olga V, Staroverov, Dmitriy B, Merzlyak, Ekaterina M, Turchaninova, Maria A, Shugay, Mikhail, Bolotin, Dmitriy A, Pogorelyy, Mikhail V, Mamedov, Ilgar Z, Bobrynina, Vlasta, Maschan, Mikhail, Lebedev, Yuri B, Chudakov, Dmitriy M

“…The relationship between maternal and child immunity has been actively studied in the context of complications during pregnancy, autoimmune diseases, and…”
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Distinct organization of adaptive immunity in the long-lived rodent Spalax galili by Izraelson, M, Metsger, M, Davydov, A N, Shagina, I A, Dronina, M A, Obraztsova, A S, Miskevich, D A, Mamedov, I Z, Volchkova, L N, Nakonechnaya, T O, Shugay, M, Bolotin, D A, Staroverov, D B, Sharonov, G V, Kondratyuk, E Y, Zagaynova, E V, Lukyanov, S, Shams, I, Britanova, O V, Chudakov, D M

“…A balanced immune response is a cornerstone of healthy aging. Here, we uncover distinctive features of the long-lived blind mole-rat (Spalax spp.) adaptive…”
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Drip Irrigation of Rice on Light-Colored Kastanozems of Volga Upland by Kruzhilin, I. P., Doubenok, N. N., Ganiev, M. A., Melichov, V. V., Rodin, K. A., Bolotin, A. G.

“…The article presents findings of the research with respect to rice cultivation with drip irrigation systems, which contribute to higher profitability due to…”
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Age-related decrease in TCR repertoire diversity measured with deep and normalized sequence profiling by Britanova, Olga V, Putintseva, Ekaterina V, Shugay, Mikhail, Merzlyak, Ekaterina M, Turchaninova, Maria A, Staroverov, Dmitriy B, Bolotin, Dmitriy A, Lukyanov, Sergey, Bogdanova, Ekaterina A, Mamedov, Ilgar Z, Lebedev, Yuriy B, Chudakov, Dmitriy M

“…The decrease of TCR diversity with aging has never been studied by direct methods. In this study, we combined high-throughput Illumina sequencing with unique…”
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