Search Results - "Bolognini, Davide"

Cohen–Macaulay binomial edge ideals and accessible graphs by Bolognini, Davide, Macchia, Antonio, Strazzanti, Francesco

“…The cut sets of a graph are special sets of vertices whose removal disconnects the graph. They are fundamental in the study of binomial edge ideals, since they…”
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Evaluation of Germline Structural Variant Calling Methods for Nanopore Sequencing Data by Bolognini, Davide, Magi, Alberto

“…Structural variants (SVs) are genomic rearrangements that involve at least 50 nucleotides and are known to have a serious impact on human health. While prior…”
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P-flag spaces and incidence stratifications by Bolognini, Davide, Sentinelli, Paolo

“…For any finite poset P , we introduce a homogeneous space as a quotient of the general linear group. When P is a chain this quotient is a complete flag…”
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NanoR: A user-friendly R package to analyze and compare nanopore sequencing data by Bolognini, Davide, Bartalucci, Niccolò, Mingrino, Alessandra, Vannucchi, Alessandro Maria, Magi, Alberto

“…MinION and GridION X5 from Oxford Nanopore Technologies are devices for real-time DNA and RNA sequencing. On the one hand, MinION is the only real-time, low…”
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Single-cell analysis of structural variations and complex rearrangements with tri-channel processing by Sanders, Ashley D., Meiers, Sascha, Ghareghani, Maryam, Porubsky, David, Jeong, Hyobin, van Vliet, M. Alexandra C. C., Rausch, Tobias, Richter-Pechańska, Paulina, Kunz, Joachim B., Jenni, Silvia, Bolognini, Davide, Longo, Gabriel M. C., Raeder, Benjamin, Kinanen, Venla, Zimmermann, Jürgen, Benes, Vladimir, Schrappe, Martin, Mardin, Balca R., Kulozik, Andreas E., Bornhauser, Beat, Bourquin, Jean-Pierre, Marschall, Tobias, Korbel, Jan O.

“…Structural variation (SV), involving deletions, duplications, inversions and translocations of DNA segments, is a major source of genetic variability in…”
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Effect of space flight on the behavior of human retinal pigment epithelial ARPE-19 cells and evaluation of coenzyme Q10 treatment by Cialdai, Francesca, Bolognini, Davide, Vignali, Leonardo, Iannotti, Nicola, Cacchione, Stefano, Magi, Alberto, Balsamo, Michele, Vukich, Marco, Neri, Gianluca, Donati, Alessandro, Monici, Monica, Capaccioli, Sergio, Lulli, Matteo

“…Astronauts on board the International Space Station (ISS) are exposed to the damaging effects of microgravity and cosmic radiation. One of the most critical…”
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GASOLINE: detecting germline and somatic structural variants from long-reads data by Magi, Alberto, Mattei, Gianluca, Mingrino, Alessandra, Caprioli, Chiara, Ronchini, Chiara, Frigè, Gianmaria, Semeraro, Roberto, Baragli, Marta, Bolognini, Davide, Colombo, Emanuela, Mazzarella, Luca, Pelicci, Pier Giuseppe

“…Long-read sequencing allows analyses of single nucleic-acid molecules and produces sequences in the order of tens to hundreds kilobases. Its application to…”
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Versatile Quality Control Methods for Nanopore Sequencing by Bolognini, Davide, Semeraro, Roberto, Magi, Alberto

“…Third-generation sequencing using nanopores as biosensors has recently emerged as a strategy capable to overcome next-generation sequencing drawbacks and…”
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Powers of monomial ideals with characteristic-dependent Betti numbers by Bolognini, Davide, Macchia, Antonio, Strazzanti, Francesco, Welker, Volkmar

“…We explore the dependence of the Betti numbers of monomial ideals on the characteristic of the field. A first observation is that for a fixed prime p either…”
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Towards Seismic Design of Nonstructural Elements: Italian Code-Compliant Acceleration Floor Response Spectra by Chichino, Beatrice, Peloso, Simone, Bolognini, Davide, Moroni, Claudio, Perrone, Daniele, Brunesi, Emanuele

“…Seismic risk reduction of a building system, meant as primary building structure and nonstructural elements (NSEs) as a whole, must rely upon an adequate…”
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High-resolution Nanopore methylome-maps reveal random hyper-methylation at CpG-poor regions as driver of chemoresistance in leukemias by Magi, Alberto, Mattei, Gianluca, Mingrino, Alessandra, Caprioli, Chiara, Ronchini, Chiara, Frigè, Gianmaria, Semeraro, Roberto, Bolognini, Davide, Rambaldi, Alessandro, Candoni, Anna, Colombo, Emanuela, Mazzarella, Luca, Pelicci, Pier Giuseppe

“…Aberrant DNA methylation at CpG dinucleotides is a cancer hallmark that is associated with the emergence of resistance to anti cancer treatment, though…”
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Author Correction: High-resolution Nanopore methylome-maps reveal random hyper-methylation at CpG-poor regions as driver of chemoresistance in leukemias by Magi, Alberto, Mattei, Gianluca, Mingrino, Alessandra, Caprioli, Chiara, Ronchini, Chiara, Frigè, Gianmaria, Semeraro, Roberto, Bolognini, Davide, Rambaldi, Alessandro, Candoni, Anna, Colombo, Emanuela, Mazzarella, Luca, Pelicci, Pier Giuseppe

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Nanopore sequencing for the screening of myeloid and lymphoid neoplasms with eosinophilia and rearrangement of PDGFRα, PDGFRβ, FGFR1 or PCM1-JAK2 by Romagnoli, Simone, Bartalucci, Niccolò, Gesullo, Francesca, Balliu, Manjola, Bonifacio, Stefania, Fernandez, Anair Graciela Lema, Mannelli, Francesco, Bolognini, Davide, Pelo, Elisabetta, Mecucci, Cristina, Guglielmelli, Paola, Vannucchi, Alessandro Maria

“…Eosinophilia represents a group of diseases with heterogeneous pathobiology and clinical phenotypes. Among the alterations found in primary Eosinophilia, gene…”
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Cohomological dimension and arithmetical rank of some determinantal ideals by Davide Bolognini, Alessio Caminata, Antonio Macchia, Maral Mostafazadehfard

“…Let M be a (2 × n) non-generic matrix of linear forms in a polynomial ring. For large classes of such matrices, we compute the cohomological dimension (cd) and…”
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Immanant varieties by Bolognini, Davide, Sentinelli, Paolo

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Linear extensions and shelling orders by Bolognini, Davide, Sentinelli, Paolo

“…Abstract We prove that linear extensions of the Bruhat order of a matroid are shelling orders and that the barycentric subdivision of a matroid is a Coxeter…”
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Non-ridge-chordal complexes whose clique complex has shellable Alexander dual by Benedetti, Bruno, Bolognini, Davide

“…A recent conjecture that appeared in three papers by Bigdeli–Faridi, Dochtermann, and Nikseresht, is that every simplicial complex whose clique complex has…”
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Betti splitting via componentwise linear ideals by Bolognini, Davide

“…A monomial ideal I admits a Betti splitting I=J+K if the Betti numbers of I can be determined in terms of the Betti numbers of the ideals J, K and J∩K. Given a…”
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Cohen-Macaulay binomial edge ideals of small graphs by Bolognini, Davide, Macchia, Antonio, Rinaldo, Giancarlo, Strazzanti, Francesco

“…A combinatorial property that characterizes Cohen-Macaulay binomial edge ideals has long been elusive. A recent conjecture ties the Cohen-Macaulayness of a…”
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VISOR: a versatile haplotype-aware structural variant simulator for short- and long-read sequencing by Bolognini, Davide, Sanders, Ashley, Korbel, Jan O, Magi, Alberto, Benes, Vladimir, Rausch, Tobias

“…Abstract Summary VISOR is a tool for haplotype-specific simulations of simple and complex structural variants (SVs). The method is applicable to haploid,…”
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