Search Results - "Bogomolov, Marina"

Deciding whether follow-up studies have replicated findings in a preliminary large-scale omics study by Heller, Ruth, Bogomolov, Marina, Benjamini, Yoav

“…We propose a formal method to declare that findings from a primary study have been replicated in a follow-up study. Our proposal is appropriate for primary…”
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Characterization of Expression Quantitative Trait Loci in Pedigrees from Colombia and Costa Rica Ascertained for Bipolar Disorder by Peterson, Christine B, Service, Susan K, Jasinska, Anna J, Gao, Fuying, Zelaya, Ivette, Teshiba, Terri M, Bearden, Carrie E, Cantor, Rita M, Reus, Victor I, Macaya, Gabriel, López-Jaramillo, Carlos, Bogomolov, Marina, Benjamini, Yoav, Eskin, Eleazar, Coppola, Giovanni, Freimer, Nelson B, Sabatti, Chiara

“…The observation that variants regulating gene expression (expression quantitative trait loci, eQTL) are at a high frequency among SNPs associated with complex…”
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Testing partial conjunction hypotheses under dependency, with applications to meta-analysis by Bogomolov, Marina

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Selective inference on multiple families of hypotheses by Benjamini, Yoav, Bogomolov, Marina

“…In many complex multiple‐testing problems the hypotheses are divided into families. Given the data, families with evidence for true discoveries are selected,…”
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Replicability Across Multiple Studies by Bogomolov, Marina, Heller, Ruth

“…Meta-analysis is routinely performed in many scientific disciplines. This analysis is attractive since discoveries are possible even when all the individual…”
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Assessing replicability of findings across two studies of multiple features by BOGOMOLOV, MARINA, HELLER, RUTH

“…Replicability analysis aims to identify the overlapping signals across independent studies that examine the same features. For this purpose we develop…”
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Filtering the Rejection Set While Preserving False Discovery Rate Control by Katsevich, Eugene, Sabatti, Chiara, Bogomolov, Marina

“…Scientific hypotheses in a variety of applications have domain-specific structures, such as the tree structure of the international classification of diseases…”
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Discovering Findings That Replicate From a Primary Study of High Dimension to a Follow-Up Study by Bogomolov, Marina, Heller, Ruth

“…We consider the problem of identifying whether findings replicate from one study of high dimension to another, when the primary study guides the selection of…”
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Order restricted univariate and multivariate inference with adjustment for covariates in partially linear models by Bogomolov, Marina, Davidov, Ori

“…In a variety of applications researchers are interested in comparing two or more naturally ordered experimental conditions after adjusting for covariates…”
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Hypotheses on a tree: new error rates and testing strategies by Bogomolov, Marina, Peterson, Christine B, Benjamini, Yoav, Sabatti, Chiara

“…We introduce a multiple testing procedure that controls global error rates at multiple levels of resolution. Conceptually, we frame this problem as the…”
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Many Phenotypes Without Many False Discoveries: Error Controlling Strategies for Multitrait Association Studies by Peterson, Christine B., Bogomolov, Marina, Benjamini, Yoav, Sabatti, Chiara

“…ABSTRACT The genetic basis of multiple phenotypes such as gene expression, metabolite levels, or imaging features is often investigated by testing a large…”
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A powerful statistical framework for generalization testing in GWAS, with application to the HCHS/SOL by Sofer, Tamar, Heller, Ruth, Bogomolov, Marina, Avery, Christy L., Graff, Mariaelisa, North, Kari E., Reiner, Alex P., Thornton, Timothy A., Rice, Kenneth, Benjamini, Yoav, Laurie, Cathy C., Kerr, Kathleen F.

“…ABSTRACT In genome‐wide association studies (GWAS), “generalization” is the replication of genotype‐phenotype association in a population with different…”
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Genetic variation and gene expression across multiple tissues and developmental stages in a nonhuman primate by Jasinska, Anna J, Zelaya, Ivette, Service, Susan K, Peterson, Christine B, Cantor, Rita M, Choi, Oi-Wa, DeYoung, Joseph, Eskin, Eleazar, Fairbanks, Lynn A, Fears, Scott, Furterer, Allison E, Huang, Yu S, Ramensky, Vasily, Schmitt, Christopher A, Svardal, Hannes, Jorgensen, Matthew J, Kaplan, Jay R, Villar, Diego, Aken, Bronwen L, Flicek, Paul, Nag, Rishi, Wong, Emily S, Blangero, John, Dyer, Thomas D, Bogomolov, Marina, Benjamini, Yoav, Weinstock, George M, Dewar, Ken, Sabatti, Chiara, Wilson, Richard K, Jentsch, J David, Warren, Wesley, Coppola, Giovanni, Woods, Roger P, Freimer, Nelson B

“…Nelson Freimer and colleagues analyze gene expression data from multiple tissue samples combined with genotype data from vervet monkeys to catalog expression…”
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Testing partial conjunction hypotheses under dependency, with applications to meta-analysis by Bogomolov, Marina

“…In many statistical problems the hypotheses are naturally divided into groups, and the investigators are interested to perform group-level inference, possibly…”
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Replicability Analysis for Natural Language Processing: Testing Significance with Multiple Datasets by Dror, Rotem, Baumer, Gili, Bogomolov, Marina, Reichart, Roi

“…With the ever growing amount of textual data from a large variety of languages, domains, and genres, it has become standard to evaluate NLP algorithms on…”
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Replicability Across Multiple Studies by Bogomolov, Marina, Heller, Ruth

“…Meta-analysis is routinely performed in many scientific disciplines. This analysis is attractive since discoveries are possible even when all the individual…”
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A powerful statistical framework for generalization testing in GWAS, with application to the HCHS/SOL: S ofer et al by Sofer, Tamar, Heller, Ruth, Bogomolov, Marina, Avery, Christy L., Graff, Mariaelisa, North, Kari E., Reiner, Alex P., Thornton, Timothy A., Rice, Kenneth, Benjamini, Yoav, Laurie, Cathy C., Kerr, Kathleen F.

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Genetic variation and gene expression across multiple tissues and developmental stages in a non-human primate by Jasinska, Anna J., Zelaya, Ivette, Service, Susan K., Peterson, Christine B., Cantor, Rita M., Choi, Oi-Wa, DeYoung, Joseph, Eskin, Eleazar, Fairbanks, Lynn A., Fears, Scott, Furterer, Allison E., Huang, Yu S., Ramensky, Vasily, Schmitt, Christopher A., Svardal, Hannes, Jorgensen, Matthew J., Kaplan, Jay R., Villar, Diego, Aken, Bronwen L., Flicek, Paul, Nag, Rishi, Wong, Emily S., Blangero, John, Dyer, Thomas D., Bogomolov, Marina, Benjamini, Yoav, Weinstock, George M., Dewar, Ken, Sabatti, Chiara, Wilson, Richard K., Jentsch, J. David, Warren, Wesley, Coppola, Giovanni, Woods, Roger P., Freimer, Nelson B.

“…By analyzing multi-tissue gene expression and genome-wide genetic variation data in samples from a vervet monkey pedigree, we generated a transcriptome…”
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Protocol for an Observational Study on the Effects of Giving Births from Unintended Pregnancies on Later Life Physical and Mental Health by Roy, Samrat, Bogomolov, Marina, Heller, Ruth, Claridge, Amy M, Beeson, Tishra, Small, Dylan S

“…There has been increasing interest in studying the effect of giving births to unintended pregnancies on later life physical and mental health. In this article,…”
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Filtering the rejection set while preserving false discovery rate control by Katsevich, Eugene, Sabatti, Chiara, Bogomolov, Marina

“…Scientific hypotheses in a variety of applications have domain-specific structures, such as the tree structure of the International Classification of Diseases…”
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