Search Results - "Boada, Yadira"

Integrating mathematical modeling into synthetic biology education: a comprehensive approach through webinars and syllabus development by Boada, Yadira, Flores, Francisco J., Vignoni, Alejandro

“…Mathematical modeling is a fundamental aspect of synthetic biology, enabling precise design and analysis of biological systems. To enhance students'…”
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Extended Metabolic Biosensor Design for Dynamic Pathway Regulation of Cell Factories by Boada, Yadira, Vignoni, Alejandro, Picó, Jesús, Carbonell, Pablo

“…Transcription factor-based biosensors naturally occur in metabolic pathways to maintain cell growth and to provide a robust response to environmental…”
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Gene Expression Space Shapes the Bioprocess Trade-Offs among Titer, Yield and Productivity by Santos-Navarro, Fernando N., Boada, Yadira, Vignoni, Alejandro, Picó, Jesús

“…Optimal gene expression is central for the development of both bacterial expression systems for heterologous protein production, and microbial cell factories…”
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PLATERO: A calibration protocol for plate reader green fluorescence measurements by González-Cebrián, Alba, Borràs-Ferrís, Joan, Boada, Yadira, Vignoni, Alejandro, Ferrer, Alberto, Picó, Jesús

“…One of the most common sources of information in Synthetic Biology is the data coming from plate reader fluorescence measurements. These experiments provide a…”
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Modeling and Optimization of a Molecular Biocontroller for the Regulation of Complex Metabolic Pathways by Boada, Yadira, Santos-Navarro, Fernando N, Picó, Jesús, Vignoni, Alejandro

“…Achieving optimal production in microbial cell factories, robustness against changing intracellular and environmental perturbations requires the dynamic…”
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Modelling biochemical systems: from Mass Action Kinetics to Linear Noise Approximation by Jesús Picó, Alejandro Vignoni, Enric Picó-Marco, Yadira Boada

“…In the last decade we have witnessed a growing application of engineering techniques to biology. Areas such as Systems Biology or, more recently, Synthetic…”
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Multi-Objective Optimization Tuning Framework for Kinetic Parameter Selection and Estimation by Boada, Yadira, Picó, Jesús, Vignoni, Alejandro

“…Semi-mechanistic kinetic (i.e., dynamic) models based on first principles are particularly relevant in biology, as they can explain and predict functional…”
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Multiobjective Identification of a Feedback Synthetic Gene Circuit by Boada, Yadira, Vignoni, Alejandro, Pico, Jesus

“…Kinetic (i.e., dynamic) semimechanistic models based on the first principles are particularly important in systems and synthetic biology since they can explain…”
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Modelado de sistemas bioquímicos: De la Ley de Acción de Masas a la Aproximación Lineal del Ruido by Picó, Jesús, Vignoni, Alejandro, Picó-Marco, Enric, Boada, Yadira

“…Durante la ultima década hemos vivido una creciente aplicación de técnicas propias de las ingenierías a la biología. Áreas como la Biología de Sistemas o, más…”
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Stochastic Differential Equations for Practical Simulation of Gene Circuits by Picó, Jesús, Vignoni, Alejandro, Boada, Yadira

“…The Chemical Langevin Equation approach allows simple stochastic simulation of gene circuits under many practical situations where the number of molecules of…”
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Advancements in synthetic biology-based bacterial cancer therapy: A modular design approach by Arboleda-García, Andrés, Alarcon-Ruiz, Ivan, Boada-Acosta, Lissette, Boada, Yadira, Vignoni, Alejandro, Jantus-Lewintre, Eloisa

“…Synthetic biology aims to program living bacteria cells with artificial genetic circuits for user-defined functions, transforming them into powerful tools with…”
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Engineered Control of Genetic Variability Reveals Interplay among Quorum Sensing, Feedback Regulation, and Biochemical Noise by Boada, Yadira, Vignoni, Alejandro, Picó, Jesús

“…Stochastic fluctuations in gene expression trigger both beneficial and harmful consequences for cell behavior. Therefore, achieving a desired mean protein…”
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RBS and Promoter Strengths Determine the Cell-Growth-Dependent Protein Mass Fractions and Their Optimal Synthesis Rates by Santos-Navarro, Fernando N, Vignoni, Alejandro, Boada, Yadira, Picó, Jesús

“…Models of gene expression considering host–circuit interactions are relevant for understanding both the strategies and associated trade-offs that cell…”
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Multi-objective optimization framework to obtain model-based guidelines for tuning biological synthetic devices: an adaptive network case by Boada, Yadira, Reynoso-Meza, Gilberto, Picó, Jesús, Vignoni, Alejandro

“…Model based design plays a fundamental role in synthetic biology. Exploiting modularity, i.e. using biological parts and interconnecting them to build new and…”
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Characterization of Gene Circuit Parts Based on Multiobjective Optimization by Using Standard Calibrated Measurements by Boada, Yadira, Vignoni, Alejandro, Alarcon‐Ruiz, Iván, Andreu‐Vilarroig, Carlos, Monfort‐Llorens, Roger, Requena, Adrián, Picó, Jesús

“…Standardization and characterization of biological parts is necessary for the further development of bottom‐up synthetic biology. Herein, an easy‐to‐use…”
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Automated code evaluation of computer programming sessions with MATLAB Grader by Boada, Yadira, Vignoni, Alejandro

“…Automatic grading of code and computational practices offers several beneficial practical and pedagogical advantages and is now possible using a variety of…”
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Multicolor plate reader fluorescence calibration by Beal, Jacob, Telmer, Cheryl A, Vignoni, Alejandro, Boada, Yadira, Baldwin, Geoff S, Hallett, Liam, Lee, Taeyang, Selvarajah, Vinoo, Billerbeck, Sonja, Brown, Bradley, Cai, Guo-nan, Cai, Liang, Eisenstein, Edward, Kiga, Daisuke, Ross, David, Alperovich, Nina, Sprent, Noah, Thompson, Jaclyn, Young, Eric M, Endy, Drew, Haddock-Angelli, Traci

“…Abstract Plate readers are commonly used to measure cell growth and fluorescence, yet the utility and reproducibility of plate reader data is limited by the…”
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Control de Seguimiento de Trayectoria y Paletización de un Robot de Tres Grados de Libertad tipo SCARA (Selective Compliance Assembly Robot Arm) by Luis Alberto Morales, Nelson Sotomayor Sotomayor, Yadira Boada

“…El presente trabajo tiene por objeto el ensamblaje y control de los componentes de un robot SCARA de tres grados de libertad. El manipulador cuenta con tres…”
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