Search Results - "Blumenkamp, Patrick"

Curare and GenExVis: a versatile toolkit for analyzing and visualizing RNA-Seq data by Blumenkamp, Patrick, Pfister, Max, Diedrich, Sonja, Brinkrolf, Karina, Jaenicke, Sebastian, Goesmann, Alexander

“…Even though high-throughput transcriptome sequencing is routinely performed in many laboratories, computational analysis of such data remains a cumbersome…”
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CRP-Like Transcriptional Regulator MrpC Curbs c-di-GMP and 3',3'-cGAMP Nucleotide Levels during Development in Myxococcus xanthus by Kuzmich, Sofya, Blumenkamp, Patrick, Meier, Doreen, Szadkowski, Dobromir, Goesmann, Alexander, Becker, Anke, Søgaard-Andersen, Lotte

“…Myxococcus xanthus has a nutrient-regulated biphasic life cycle forming predatory swarms in the presence of nutrients and spore-filled fruiting bodies in the…”
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Flexible metagenome analysis using the MGX framework by Jaenicke, Sebastian, Albaum, Stefan P, Blumenkamp, Patrick, Linke, Burkhard, Stoye, Jens, Goesmann, Alexander

“…The characterization of microbial communities based on sequencing and analysis of their genetic information has become a popular approach also referred to as…”
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A MoClo-Compatible Toolbox of ECF Sigma Factor-Based Regulatory Switches for Proteobacterial Chassis by Meier, Doreen, Rauch, Christian, Wagner, Marcel, Klemm, Paul, Blumenkamp, Patrick, Müller, Raphael, Ellenberger, Eric, Karia, Kinnari M, Vecchione, Stefano, Serrania, Javier, Lechner, Marcus, Fritz, Georg, Goesmann, Alexander, Becker, Anke

“…The construction of complex synthetic gene circuits with predetermined and reliable output depends on orthogonal regulatory parts that do not inadvertently…”
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Functional Degeneracy in Paracoccus denitrificans Pd1222 Is Coordinated via RamB, Which Links Expression of the Glyoxylate Cycle to Activity of the Ethylmalonyl-CoA Pathway by Kremer, Katharina, Meier, Doreen, Theis, Lisa, Miller, Stephanie, Rost-Nasshan, Aerin, Naing, Yadanar T, Zarzycki, Jan, Paczia, Nicole, Serrania, Javier, Blumenkamp, Patrick, Goesmann, Alexander, Becker, Anke, Thanbichler, Martin, Hochberg, Georg K A, Carter, Michael S, Erb, Tobias J

“…Metabolic degeneracy describes the phenomenon that cells can use one substrate through different metabolic routes, while metabolic plasticity, refers to the…”
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Effect of UV irradiation on Sulfolobus acidocaldarius and involvement of the general transcription factor TFB3 in the early UV response by Schult, Frank, Le, Thuong N, Albersmeier, Andreas, Rauch, Bernadette, Blumenkamp, Patrick, van der Does, Chris, Goesmann, Alexander, Kalinowski, Jörn, Albers, Sonja-Verena, Siebers, Bettina

“…Abstract Exposure to UV light can result in severe DNA damage. The alternative general transcription factor (GTF) TFB3 has been proposed to play a key role in…”
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Protein aggregation is a consequence of the dormancy-inducing membrane toxin TisB in Escherichia coli by Leinberger, Florian H, Cassidy, Liam, Edelmann, Daniel, Schmid, Nicole E, Oberpaul, Markus, Blumenkamp, Patrick, Schmidt, Sebastian, Natriashvili, Ana, Ulbrich, Maximilian H, Tholey, Andreas, Koch, Hans-Georg, Berghoff, Bork A

“…Bacterial dormancy is a valuable strategy to survive stressful conditions. Toxins from chromosomal toxin-antitoxin systems have the potential to halt cell…”
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Broad‐scale phenotyping in Arabidopsis reveals varied involvement of RNA interference across diverse plant‐microbe interactions by Ruf, Alessa, Thieron, Hannah, Nasfi, Sabrine, Lederer, Bernhard, Fricke, Sebastian, Adeshara, Trusha, Postma, Johannes, Blumenkamp, Patrick, Kwon, Seomun, Brinkrolf, Karina, Feldbrügge, Michael, Goesmann, Alexander, Kehr, Julia, Steinbrenner, Jens, Šečić, Ena, Göhre, Vera, Weiberg, Arne, Kogel, Karl‐Heinz, Panstruga, Ralph, Robatzek, Silke

“…Abstract RNA interference (RNAi) is a crucial mechanism in immunity against infectious microbes through the action of DICER‐LIKE (DCL) and ARGONAUTE (AGO)…”
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