Search Results - "Birnbaum, Kenneth D"

The potential of single-cell profiling in plants by Efroni, Idan, Birnbaum, Kenneth D

“…Single-cell transcriptomics has been employed in a growing number of animal studies, but the technique has yet to be widely used in plants. Nonetheless, early…”
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Advances and Opportunities in Single-Cell Transcriptomics for Plant Research by Seyfferth, Carolin, Renema, Jim, Wendrich, Jos R, Eekhout, Thomas, Seurinck, Ruth, Vandamme, Niels, Blob, Bernhard, Saeys, Yvan, Helariutta, Yrjo, Birnbaum, Kenneth D, De Rybel, Bert

“…Single-cell approaches are quickly changing our view on biological systems by increasing the spatiotemporal resolution of our analyses to the level of the…”
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Week-long imaging of cell divisions in the Arabidopsis root meristem by Rahni, Ramin, Birnbaum, Kenneth D

“…Characterizing the behaviors of dynamic systems requires capturing them with high temporal and spatial resolution. Owing to its transparency and genetic…”
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Regulation of Leaf Maturation by Chromatin-Mediated Modulation of Cytokinin Responses by Efroni, Idan, Han, Soon-Ki, Kim, Hye Jin, Wu, Miin-Feng, Steiner, Evyatar, Birnbaum, Kenneth D., Hong, Jong Chan, Eshed, Yuval, Wagner, Doris

“…Plant shoots display indeterminate growth, while their evolutionary decedents, the leaves, are determinate. Determinate leaf growth is conditioned by the…”
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Nitrogen economics of root foraging: Transitive closure of the nitrate–cytokinin relay and distinct systemic signaling for N supply vs. demand by Ruffel, Sandrine, Krouk, Gabriel, Ristova, Daniela, Shasha, Dennis, Birnbaum, Kenneth D, Coruzzi, Gloria M

“…As sessile organisms, root plasticity enables plants to forage for and acquire nutrients in a fluctuating underground environment. Here, we use genetic and…”
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Quantification of cell identity from single-cell gene expression profiles by Efroni, Idan, Ip, Pui-Leng, Nawy, Tal, Mello, Alison, Birnbaum, Kenneth D

“…The definition of cell identity is a central problem in biology. While single-cell RNA-seq provides a wealth of information regarding cell states, better…”
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A Case for Distributed Control of Local Stem Cell Behavior in Plants by Rahni, Ramin, Efroni, Idan, Birnbaum, Kenneth D.

“…The root meristem has a centrally located group of mitotically quiescent cells, to which current models assign a stem cell organizer function. However,…”
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Transcriptome Dynamics of the Stomatal Lineage: Birth, Amplification, and Termination of a Self-Renewing Population by Adrian, Jessika, Chang, Jessica, Ballenger, Catherine E., Bargmann, Bastiaan O.R., Alassimone, Julien, Davies, Kelli A., Lau, On Sun, Matos, Juliana L., Hachez, Charles, Lanctot, Amy, Vatén, Anne, Birnbaum, Kenneth D., Bergmann, Dominique C.

“…Developmental transitions can be described in terms of morphology and the roles of individual genes, but also in terms of global transcriptional and epigenetic…”
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Slicing across Kingdoms: Regeneration in Plants and Animals by Birnbaum, Kenneth D., Alvarado, Alejandro Sánchez

“…Multicellular organisms possessing relatively long life spans are subjected to diverse, constant, and often intense intrinsic and extrinsic challenges to their…”
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Cell-specific nitrogen responses mediate developmental plasticity by Gifford, Miriam L, Dean, Alexis, Gutierrez, Rodrigo A, Coruzzi, Gloria M, Birnbaum, Kenneth D

“…The organs of multicellular species consist of cell types that must function together to perform specific tasks. One critical organ function is responding to…”
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Cell-by-cell dissection of phloem development links a maturation gradient to cell specialization by Roszak, Pawel, Heo, Jung-Ok, Blob, Bernhard, Toyokura, Koichi, Sugiyama, Yuki, de Luis Balaguer, Maria Angels, Lau, Winnie W Y, Hamey, Fiona, Cirrone, Jacopo, Madej, Ewelina, Bouatta, Alida M, Wang, Xin, Guichard, Marjorie, Ursache, Robertas, Tavares, Hugo, Verstaen, Kevin, Wendrich, Jos, Melnyk, Charles W, Oda, Yoshihisa, Shasha, Dennis, Ahnert, Sebastian E, Saeys, Yvan, De Rybel, Bert, Heidstra, Renze, Scheres, Ben, Grossmann, Guido, Mähönen, Ari Pekka, Denninger, Philipp, Göttgens, Berthold, Sozzani, Rosangela, Birnbaum, Kenneth D, Helariutta, Yrjö

“…In the plant meristem, tissue-wide maturation gradients are coordinated with specialized cell networks to establish various developmental phases required for…”
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Hit-and-run transcriptional control by bZIP1 mediates rapid nutrient signaling in Arabidopsis by Para, Alessia, Li, Ying, Marshall-Colón, Amy, Varala, Kranthi, Francoeur, Nancy J., Moran, Tara M., Edwards, Molly B., Hackley, Christopher, Bargmann, Bastiaan O. R., Birnbaum, Kenneth D., McCombie, W. Richard, Krouk, Gabriel, Coruzzi, Gloria M.

“…The dynamic nature of gene regulatory networks allows cells to rapidly respond to environmental change. However, the underlying temporal connections are…”
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A rapid and sensitive, multiplex, whole mount RNA fluorescence in situ hybridization and immunohistochemistry protocol by Huang, Tian, Guillotin, Bruno, Rahni, Ramin, Birnbaum, Kenneth D, Wagner, Doris

“…Abstract Background In the past few years, there has been an explosion in single-cell transcriptomics datasets, yet in vivo confirmation of these datasets is…”
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A map of cell type‐specific auxin responses by Bargmann, Bastiaan O R, Vanneste, Steffen, Krouk, Gabriel, Nawy, Tal, Efroni, Idan, Shani, Eilon, Choe, Goh, Friml, Jiří, Bergmann, Dominique C, Estelle, Mark, Birnbaum, Kenneth D

“…In plants, changes in local auxin concentrations can trigger a range of developmental processes as distinct tissues respond differently to the same auxin…”
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Epigenetic memory and cell fate reprogramming in plants by Birnbaum, Kenneth D., Roudier, François

“…Plants have a high intrinsic capacity to regenerate from adult tissues, with the ability to reprogram adult cell fates. In contrast, epigenetic mechanisms have…”
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Plasticity regulators modulate specific root traits in discrete nitrogen environments by Gifford, Miriam L, Banta, Joshua A, Katari, Manpreet S, Hulsmans, Jo, Chen, Lisa, Ristova, Daniela, Tranchina, Daniel, Purugganan, Michael D, Coruzzi, Gloria M, Birnbaum, Kenneth D

“…Plant development is remarkably plastic but how precisely can the plant customize its form to specific environments? When the plant adjusts its development to…”
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Quantitation of cellular dynamics in growing Arabidopsis roots with light sheet microscopy by Sena, Giovanni, Frentz, Zak, Birnbaum, Kenneth D, Leibler, Stanislas

“…To understand dynamic developmental processes, living tissues have to be imaged frequently and for extended periods of time. Root development is extensively…”
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Power in Numbers: Single-Cell RNA-Seq Strategies to Dissect Complex Tissues by Birnbaum, Kenneth D

“…The growing scale and declining cost of single-cell RNA-sequencing (RNA-seq) now permit a repetition of cell sampling that increases the power to detect rare…”
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Plant Cell Shape: Trafficking Gets Edgy by Rahni, Ramin, Birnbaum, Kenneth D.

“…Polyhedral-shaped plant cells have faces, corners, and edges that can have different material properties. As Kirchhelle et al. (2016) now show, RAB-A5c reveals…”
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Integration of responses within and across Arabidopsis natural accessions uncovers loci controlling root systems architecture by Rosas, Ulises, Cibrian-Jaramillo, Angelica, Ristova, Daniela, Banta, Joshua A., Gifford, Miriam L., Fan, Angela Huihui, Zhou, Royce W., Kim, Grace Jaeyoon, Krouk, Gabriel, Birnbaum, Kenneth D., Purugganan, Michael D., Coruzzi, Gloria M.

“…Phenotypic plasticity is presumed to be involved in adaptive change toward species diversification. We thus examined how candidate genes underlying natural…”
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