Search Results - "Binkowski, A."

CASTp: Computed Atlas of Surface Topography of proteins by Binkowski, T. Andrew, Naghibzadeh, Shapor, Liang, Jie

“…Computed Atlas of Surface Topography of proteins (CASTp) provides an online resource for locating, delineating and measuring concave surface regions on…”
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39 A Cornstarch-based Ultrasonography Gel Alternative for Low Resource Settings by Binkowski, A, Riguzzi, C, Fahimi, J, Price, D

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Identification of high-risk amino-acid substitutions in hematopoietic cell transplantation: a challenging task by Marino, S R, Lee, S M, Binkowski, T A, Wang, T, Haagenson, M, Wang, H-L, Maiers, M, Spellman, S, van Besien, K, Lee, S J, Karrison, T, Artz, A

“…Allogeneic hematopoietic cell transplantation (HCT) offers the potential to cure hematologic malignancies. In the absence of an HLA-matched donor, HLA…”
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Topology independent protein structural alignment by Dundas, Joe, Binkowski, T A, DasGupta, Bhaskar, Liang, Jie

“…Identifying structurally similar proteins with different chain topologies can aid studies in homology modeling, protein folding, protein design, and protein…”
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SPINDLY, a Tetratricopeptide Repeat Protein Involved in Gibberellin Signal Transduction in Arabidopsis by Jacobsen, Steven E., Binkowski, Kalli A., Olszewski, Neil E.

“…Gibberellins (GAs) are a major class of plant hormones that control many developmental processes, including seed development and germination, flower and fruit…”
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Identification by random forest method of HLA class I amino acid substitutions associated with lower survival at day 100 in unrelated donor hematopoietic cell transplantation by Marino, S R, Lin, S, Maiers, M, Haagenson, M, Spellman, S, Klein, J P, Binkowski, T A, Lee, S J, van Besien, K

“…The identification of important amino acid substitutions associated with low survival in hematopoietic cell transplantation (HCT) is hampered by the large…”
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pvSOAR: detecting similar surface patterns of pocket and void surfaces of amino acid residues on proteins by Binkowski, T. Andrew, Freeman, Patrick, Liang, Jie

“…Detecting similar protein surfaces provides an important route for discovering unrecognized or novel functional relationship between proteins. The web server…”
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CASTp: computed atlas of surface topography of proteins with structural and topographical mapping of functionally annotated residues by Dundas, Joe, Ouyang, Zheng, Tseng, Jeffery, Binkowski, Andrew, Turpaz, Yaron, Liang, Jie

“…Cavities on a proteins surface as well as specific amino acid positioning within it create the physicochemical properties needed for a protein to perform its…”
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Feelings of energy are associated with physical activity and sleep quality, but not adiposity, in middle-aged postmenopausal women by Ward-Ritacco, Christie L, Adrian, Amanda L, O’Connor, Patrick J, Binkowski, Jessica A, Rogers, Laura Q, Johnson, Mary Ann, Evans, Ellen M

“…OBJECTIVEFeelings of fatigue and low energy are widespread among middle-aged women and have been shown to negatively affect quality of life. The aim of the…”
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The Human Proteome Organization Chromosome 6 Consortium: Integrating chromosome-centric and biology/disease driven strategies by Borchers, C.H., Kast, J., Foster, L.J., Siu, K.W.M., Overall, C.M., Binkowski, T.A., Hildebrand, W.H., Scherer, A., Mansoor, M., Keown, P.A.

“…The Human Proteome Project (HPP) is designed to generate a comprehensive map of the protein-based molecular architecture of the human body, to provide a…”
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A randomised experiment comparing low-cost ultrasound gel alternative with commercial gel by Riguzzi, Christine, Binkowski, Allison, Butterfield, Mike, Sani, Farhad, Teismann, Nathan, Fahimi, Jahan

“…Point-of-care ultrasound is a portable, relatively low-cost imaging modality with great potential utility in low-resource settings. However, commercially…”
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Crystal structure of fatty acid/phospholipid synthesis protein PlsX from Enterococcus faecalis by Kim, Y., Li, H., Binkowski, T. A., Holzle, D., Joachimiak, A.

“…PlsX is a key enzyme that coordinates the production of fatty acids and membrane phospholipids. The plsX gene is co-localized with a bacterial fab gene cluster…”
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Biochemical and Structural Characterization of a Novel Family of Cystathionine b-Synthase Domain Proteins Fused to a Zn Ribbon-Like Domain by Proudfoot, M, Sanders, SA, Singer, A, Zhang, R, Brown, G, Binkowski, A, Xu, L, Lukin, JA, Murzin, A G, Joachimiak, A, Arrowsmith, CH, Edwards, A M, Savchenko, A V, Yakunin, A F

“…We have identified a novel family of proteins, in which the N-terminal cystathionine b-synthase (CBS) domain is fused to the C-terminal Zn ribbon domain. Four…”
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Biochemical and structural characterization of a novel family of cystathionine {beta}-synthase domain proteins fused to a Zn ribbon-like domain by Proudfoot, M., Sanders, S. A., Singer, A., Zhang, R., Brown, G., Binkowski, A., Xu, L., Lukin, J. A., Murzin, A. G., Joachimiak, A., Arrowsmith, C. H., Edwards, A. M., Savchenko, A. V., Yakunin, A. F., Biosciences Division, Unive. of Toronto, MRC Centre for Protein Engineering

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Establishing high-throughput protein structure determination pipeline for structural genomics by Joachimiak, A., Zhang, R., Kim, Y., Osipiuk, J., Cuff, M., Chang, C., Nocek, B., Binkowski, A., Cymborowski, M., Lazarski, K., Chruszcz, M., Laskowski, R., Thornton, J., Duke, N., Rotella, F., Otwinowski, Z.

“…Abstract only…”
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Inferring Functional Relationships of Proteins from Local Sequence and Spatial Surface Patterns by Binkowski, T.Andrew, Adamian, Larisa, Liang, Jie

“…We describe a novel approach for inferring functional relationship of proteins by detecting sequence and spatial patterns of protein surfaces. Well-formed…”
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Assisted assignment of ligands corresponding to unknown electron density by Binkowski, T. Andrew, Cuff, Marianne, Nocek, Boguslaw, Chang, Changsoo, Joachimiak, Andrzej

“…A semi-automated computational procedure to assist in the identification of bound ligands from unknown electron density has been developed. The atomic surface…”
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PAINTING THE DARK SIDE: ART AND THE GOTHIC IMAGINATION IN NINETEETH-CENTURY AMERICA . Sarah Burns by Binkowski, Kraig A.

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JOSEPH CORNELL: SHADOWPLAY... ETERNIDAY . Lynda Roscoe Hartigan , Walter Hopps , Richard Vine , Robert Lehrman by Binkowski, Kraig A.

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Protein surface analysis for function annotation in high‐throughput structural genomics pipeline by Binkowski, T. Andrew, Joachimiak, Andrzej, Liang, Jie

“…Structural genomics (SG) initiatives are expanding the universe of protein fold space by rapidly determining structures of proteins that were intentionally…”
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