Search Results - "Bink, Marco C. A. M."

Genomic selection for fruit quality traits in apple (Malus×domestica Borkh.) by Kumar, Satish, Chagné, David, Bink, Marco C A M, Volz, Richard K, Whitworth, Claire, Carlisle, Charmaine

“…The genome sequence of apple (Malus×domestica Borkh.) was published more than a year ago, which helped develop an 8K SNP chip to assist in implementing genomic…”
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Genomic prediction using imputed whole-genome sequence data in Holstein Friesian cattle by van Binsbergen, Rianne, Calus, Mario P L, Bink, Marco C A M, van Eeuwijk, Fred A, Schrooten, Chris, Veerkamp, Roel F

“…In contrast to currently used single nucleotide polymorphism (SNP) panels, the use of whole-genome sequence data is expected to enable the direct estimation of…”
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Bayesian Markov Random Field analysis for protein function prediction based on network data by Kourmpetis, Yiannis A I, van Dijk, Aalt D J, Bink, Marco C A M, van Ham, Roeland C H J, ter Braak, Cajo J F

“…Inference of protein functions is one of the most important aims of modern biology. To fully exploit the large volumes of genomic data typically produced in…”
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High-quality, genome-wide SNP genotypic data for pedigreed germplasm of the diploid outbreeding species apple, peach, and sweet cherry through a common workflow by Vanderzande, Stijn, Howard, Nicholas P, Cai, Lichun, Da Silva Linge, Cassia, Antanaviciute, Laima, Bink, Marco C A M, Kruisselbrink, Johannes W, Bassil, Nahla, Gasic, Ksenija, Iezzoni, Amy, Van de Weg, Eric, Peace, Cameron

“…High-quality genotypic data is a requirement for many genetic analyses. For any crop, errors in genotype calls, phasing of markers, linkage maps, pedigree…”
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Longitudinal individual predictions from irregular repeated measurements data by Eekhout, Iris, van Buuren, Stef, Visser, Bram, Bink, Marco C. A. M., Huisman, Abe

“…Intensive longitudinal data can be used to explore important associations and patterns between various types of inputs and outcomes. Nonlinear relations and…”
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QTL linkage analysis of connected populations using ancestral marker and pedigree information by Bink, Marco C. A. M, Totir, L. Radu, ter Braak, Cajo J. F, Winkler, Christopher R, Boer, Martin P, Smith, Oscar S

“…The common assumption in quantitative trait locus (QTL) linkage mapping studies that parents of multiple connected populations are unrelated is unrealistic for…”
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FaRXf1: a locus conferring resistance to angular leaf spot caused by Xanthomonas fragariae in octoploid strawberry by Roach, Jack A., Verma, Sujeet, Peres, Natalia A., Jamieson, Andrew R., van de Weg, W. Eric, Bink, Marco C. A. M., Bassil, Nahla V., Lee, Seonghee, Whitaker, Vance M.

“…Key message Angular leaf spot is a devastating bacterial disease of strawberry. Resistance from two wild accessions is highly heritable and controlled by a…”
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Comparison of marker-based pairwise relatedness estimators on a pedigreed plant population by Bink, Marco C. A. M, Anderson, Amy D, van de Weg, W. Eric, Thompson, Elizabeth A

“…Several estimators have been proposed that use molecular marker data to infer the degree of relatedness for pairs of individuals. The objective of this study…”
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PediHaplotyper: software for consistent assignment of marker haplotypes in pedigrees by Voorrips, Roeland E., Bink, Marco C. A. M., Kruisselbrink, Johannes W., Koehorst-van Putten, Herma J. J., van de Weg, W. Eric

“…In the study of large outbred pedigrees with many founders, individual bi-allelic markers, such as SNP markers, carry little information. After phasing the…”
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A survey of functional genomic variation in domesticated chickens by Derks, Martijn F L, Megens, Hendrik-Jan, Bosse, Mirte, Visscher, Jeroen, Peeters, Katrijn, Bink, Marco C A M, Vereijken, Addie, Gross, Christian, de Ridder, Dick, Reinders, Marcel J T, Groenen, Martien A M

“…Deleterious genetic variation can increase in frequency as a result of mutations, genetic drift, and genetic hitchhiking. Although individual effects are often…”
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Genome‐wide association studies for additive and dominance effects for body composition traits in commercial crossbred Piétrain pigs by Heidaritabar, Marzieh, Bink, Marco C. A. M., Dervishi, Elda, Charagu, Patrick, Huisman, Abe, Plastow, Graham S.

“…Fat depth (FD) and muscle depth (MD) are economically important traits and used to estimate carcass lean content (LMP), which is one of the main breeding…”
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Fruit size QTL identification and the prediction of parental QTL genotypes and breeding values in multiple pedigreed populations of sweet cherry by Rosyara, Umesh R, Bink, Marco C. A. M, van de Weg, Eric, Zhang, Guorong, Wang, Dechun, Sebolt, Audrey, Dirlewanger, Elisabeth, Quero-Garcia, Jose, Schuster, Mirko, Iezzoni, Amy F

“…Large fruit size is a critical trait for any new sweet cherry (Prunus avium L.) cultivar, as it is directly related to grower profitability. Therefore,…”
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Prediction performance of linear models and gradient boosting machine on complex phenotypes in outbred mice by Perez, Bruno C, Bink, Marco C A M, Svenson, Karen L, Churchill, Gary A, Calus, Mario P L

“…We compared the performance of linear (GBLUP, BayesB, and elastic net) methods to a nonparametric tree-based ensemble (gradient boosting machine) method for…”
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Mutations on a conserved distal enhancer in the porcine C-reactive protein gene impair its expression in liver by Hernández-Banqué, Carles, Jové-Juncà, Teodor, Crespo-Piazuelo, Daniel, González-Rodríguez, Olga, Ramayo-Caldas, Yuliaxis, Esteve-Codina, Anna, Mercat, Marie-José, Bink, Marco C. A. M., Quintanilla, Raquel, Ballester, Maria

“…C-reactive protein (CRP) is an evolutionary highly conserved protein. Like humans, CRP acts as a major acute phase protein in pigs. While CRP regulatory…”
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Imputation to whole-genome sequence and its use in genome-wide association studies for pork colour traits in crossbred and purebred pigs by Heidaritabar, Marzieh, Huisman, Abe, Krivushin, Kirill, Stothard, Paul, Dervishi, Elda, Charagu, Patrick, Bink, Marco C. A. M., Plastow, Graham S.

“…Imputed whole-genome sequence (WGS) has been proposed to improve genome-wide association studies (GWAS), since all causative mutations responsible for…”
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QTL mapping of pomological traits in peach and related species breeding germplasm by Fresnedo-Ramírez, Jonathan, Bink, Marco C. A. M., van de Weg, Eric, Famula, Thomas R., Crisosto, Carlos H., Frett, Terrence J., Gasic, Ksenija, Peace, Cameron P., Gradziel, Thomas M.

“…Peach is an economically important fruit tree crop that exhibits high phenotypic variability yet suffers from diversity-limited gene pool. Genetic…”
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Towards genomic selection in apple (Malus × domestica Borkh.) breeding programmes: Prospects, challenges and strategies by Kumar, Satish, Bink, Marco C. A. M, Volz, Richard K, Bus, Vincent G. M, Chagné, David

“…The apple genome sequence and the availability of high-throughput genotyping technologies have initiated a new era where SNP markers are abundant across the…”
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Predicting Flowering Behavior and Exploring Its Genetic Determinism in an Apple Multi-family Population Based on Statistical Indices and Simplified Phenotyping by Durand, Jean-Baptiste, Allard, Alix, Guitton, Baptiste, van de Weg, Eric, Bink, Marco C A M, Costes, Evelyne

“…Irregular flowering over years is commonly observed in fruit trees. The early prediction of tree behavior is highly desirable in breeding programmes. This…”
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Extending Xu's Bayesian model for estimating polygenic effects using markers of the entire genome by ter Braak, Cajo J F, Boer, Martin P, Bink, Marco C A M

“…In 2003, Xu obtained remarkably precise estimates of QTL positions despite the many markers simultaneously in his Bayesian model. We extend his model and Gibbs…”
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Identity-by-descent matrix decomposition using latent ancestral allele models by ter Braak, Cajo J F, Boer, Martin P, Totir, L Radu, Winkler, Christopher R, Smith, Oscar S, Bink, Marco C A M

“…Genetic linkage and association studies are empowered by proper modeling of relatedness among individuals. Such relatedness can be inferred from marker and/or…”
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