Search Results - "Binh, P. Nguyen"

Prediction of FMN Binding Sites in Electron Transport Chains Based on 2-D CNN and PSSM Profiles by Le, Nguyen-Quoc-Khanh, Nguyen, Binh P.

“…Flavin mono-nucleotides (FMNs) are cofactors that hold responsibility for carrying and transferring electrons in the electron transport chain stage of cellular…”
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iEnhancer-ECNN: identifying enhancers and their strength using ensembles of convolutional neural networks by Nguyen, Quang H, Nguyen-Vo, Thanh-Hoang, Le, Nguyen Quoc Khanh, Do, Trang T T, Rahardja, Susanto, Nguyen, Binh P

“…Enhancers are non-coding DNA fragments which are crucial in gene regulation (e.g. transcription and translation). Having high locational variation and free…”
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Correction: A lightweight classification of adaptor proteins using transformer networks by Rahardja, Sylwan, Wang, Mou, Nguyen, Binh P, Fränti, Pasi, Rahardja, Susanto

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A lightweight classification of adaptor proteins using transformer networks by Rahardja, Sylwan, Wang, Mou, Nguyen, Binh P, Fränti, Pasi, Rahardja, Susanto

“…Adaptor proteins play a key role in intercellular signal transduction, and dysfunctional adaptor proteins result in diseases. Understanding its structure is…”
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iProDNA-CapsNet: identifying protein-DNA binding residues using capsule neural networks by Nguyen, Binh P, Nguyen, Quang H, Doan-Ngoc, Giang-Nam, Nguyen-Vo, Thanh-Hoang, Rahardja, Susanto

“…Since protein-DNA interactions are highly essential to diverse biological events, accurately positioning the location of the DNA-binding residues is necessary…”
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Classification of adaptor proteins using recurrent neural networks and PSSM profiles by Khanh Le, Nguyen Quoc, Nguyen, Quang H, Chen, Xuan, Rahardja, Susanto, Nguyen, Binh P

“…Adaptor proteins are carrier proteins that play a crucial role in signal transduction. They commonly consist of several modular domains, each having its own…”
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iPromoter-Seqvec: identifying promoters using bidirectional long short-term memory and sequence-embedded features by Nguyen-Vo, Thanh-Hoang, Trinh, Quang H, Nguyen, Loc, Nguyen-Hoang, Phuong-Uyen, Rahardja, Susanto, Nguyen, Binh P

“…Promoters, non-coding DNA sequences located at upstream regions of the transcription start site of genes/gene clusters, are essential regulatory elements for…”
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iPseU-NCP: Identifying RNA pseudouridine sites using random forest and NCP-encoded features by Nguyen-Vo, Thanh-Hoang, Nguyen, Quang H, Do, Trang T T, Nguyen, Thien-Ngan, Rahardja, Susanto, Nguyen, Binh P

“…Pseudouridine modification is most commonly found among various kinds of RNA modification occurred in both prokaryotes and eukaryotes. This biochemical event…”
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iNSP‐GCAAP: Identifying nonclassical secreted proteins using global composition of amino acid properties by Do, Trang T. T., Nguyen‐Vo, Thanh‐Hoang, Pham, Hung T., Trinh, Quang H., Nguyen, Binh P.

“…Nonclassical secreted proteins (NSPs) refer to a group of proteins released into the extracellular environment under the facilitation of different biological…”
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Editorial: Prediction of protein-protein interactions (PPIs): the next frontier by Singh, Amar, Nguyen, Binh P, Ng, Ho Leung

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Herpes zoster vaccine safety in the Aotearoa New Zealand population: a self-controlled case series study by Mbinta, James F., Wang, Alex X., Nguyen, Binh P., Paynter, Janine, Awuni, Prosper Mandela A., Pine, Russell, Sporle, Andrew A., Bowe, Steve, Simpson, Colin R.

“…In Aotearoa New Zealand, zoster vaccine live is used for the prevention of zoster and associated complications in adults. This study assessed the risk of…”
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Predicting Drug-Induced Liver Injury Using Convolutional Neural Network and Molecular Fingerprint-Embedded Features by Nguyen-Vo, Thanh-Hoang, Nguyen, Loc, Do, Nguyet, Le, Phuc H, Nguyen, Thien-Ngan, Nguyen, Binh P, Le, Ly

“…As a critical issue in drug development and postmarketing safety surveillance, drug-induced liver injury (DILI) leads to failures in clinical trials as well as…”
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Predicting high health-cost users among people with cardiovascular disease using machine learning and nationwide linked social administrative datasets by Nghiem, Nhung, Atkinson, June, Nguyen, Binh P., Tran-Duy, An, Wilson, Nick

“…Objectives To optimise planning of public health services, the impact of high-cost users needs to be considered. However, most of the existing statistical…”
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Postlicensure herpes zoster vaccine effectiveness: systematic review protocol by Mbinta, James F, Nguyen, Binh P, Awuni, Prosper Mandela A, Eme, Paul E, Simpson, Colin R

“…IntroductionHerpes zoster (HZ) and associated complications inflict substantial morbidity and associated healthcare and socioeconomic burdens. Current…”
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i4mC-GRU: Identifying DNA N4-Methylcytosine sites in mouse genomes using bidirectional gated recurrent unit and sequence-embedded features by Nguyen-Vo, Thanh-Hoang, Trinh, Quang H., Nguyen, Loc, Nguyen-Hoang, Phuong-Uyen, Rahardja, Susanto, Nguyen, Binh P.

“…N4-methylcytosine (4mC) is one of the most common DNA methylation modifications found in both prokaryotic and eukaryotic genomes. Since the 4mC has various…”
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eMIC-AntiKP: Estimating minimum inhibitory concentrations of antibiotics towards Klebsiella pneumoniae using deep learning by Nguyen, Quang H., Ngo, Hoang H., Nguyen-Vo, Thanh-Hoang, Do, Trang T.T., Rahardja, Susanto, Nguyen, Binh P.

“…Nowadays, antibiotic resistance has become one of the most concerning problems that directly affects the recovery process of patients. For years, numerous…”
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COVID-19 vaccine strategies for Aotearoa New Zealand: a mathematical modelling study by Nguyen, Trung, Adnan, Mehnaz, Nguyen, Binh P, de Ligt, Joep, Geoghegan, Jemma L, Dean, Richard, Jefferies, Sarah, Baker, Michael G, Seah, Winston KG, Sporle, Andrew A, French, Nigel Peter, Murdoch, David R, Welch, David, Simpson, Colin R

“…Background: COVID-19 elimination measures, including border closures have been applied in New Zealand. We have modelled the potential effect of vaccination…”
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Robo-advisor using genetic algorithm and BERT sentiments from tweets for hybrid portfolio optimisation by Leow, Edmund Kwong Wei, Nguyen, Binh P., Chua, Matthew Chin Heng

“…•We proposed two robo-advisors capturing market conditions through Twitter sentiments.•Google’s BERT model was used to convert tweets to sentiments.•Genetic…”
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In silico identification of Histone Deacetylase inhibitors using Streamlined Masked Transformer-based Pretrained features by Vinh, Tuan, Nguyen-Vo, Thanh-Hoang, Le, Viet-Tuan, Phan-Nguyen, Xuan-Phuc, Nguyen, Binh P.

“…Histone Deacetylases (HDACs) are enzymes that regulate gene expression by removing acetyl groups from histones. They are involved in various diseases,…”
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Predicting Cardiotoxicity of Molecules Using Attention-Based Graph Neural Networks by Vinh, Tuan, Nguyen, Loc, Trinh, Quang H., Nguyen-Vo, Thanh-Hoang, Nguyen, Binh P.

“…In drug discovery, the search for new and effective medications is often hindered by concerns about toxicity. Numerous promising molecules fail to pass the…”
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