Search Results - "Bhat, T. N."

The Protein Data Bank by Berman, Helen M., Battistuz, Tammy, Bhat, T. N., Bluhm, Wolfgang F., Bourne, Philip E., Burkhardt, Kyle, Feng, Zukang, Gilliland, Gary L., Iype, Lisa, Jain, Shri, Fagan, Phoebe, Marvin, Jessica, Padilla, David, Ravichandran, Veerasamy, Schneider, Bohdan, Thanki, Narmada, Weissig, Helge, Westbrook, John D., Zardecki, Christine

“…The Protein Data Bank [PDB; Berman, Westbrook et al. (2000), Nucleic Acids Res.28, 235–242; http://www.pdb.org/] is the single worldwide archive of primary…”
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The Protein Data Bank and the challenge of structural genomics by Berman, H M, Bhat, T N, Bourne, P E, Feng, Z, Gilliland, G, Weissig, H, Westbrook, J

“…The PDB has created systems for the processing, exchange, query, and distribution of data that will enable many aspects of high throughput structural genomics…”
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Comment on “Determination of alloy composition and strain in multiple AlGaN buffer layers in GaN/Si system” [Appl. Phys. Lett. 105 , 232113 (2014)] by Liu, H. F., Dolmanan, S. B., Bhat, T. N., Tripathy, S.

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The Protein Data Bank by Berman, H M, Westbrook, J, Feng, Z, Gilliland, G, Bhat, T N, Weissig, H, Shindyalov, I N, Bourne, P E

“…The Protein Data Bank (PDB; http://www.rcsb.org/pdb/ ) is the single worldwide archive of structural data of biological macromolecules. This paper describes…”
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The Protein Data Bank: unifying the archive by Westbrook, John, Feng, Zukang, Jain, Shri, Bhat, T N, Thanki, Narmada, Ravichandran, Veerasamy, Gilliland, Gary L, Bluhm, Wolfgang, Weissig, Helge, Greer, Douglas S, Bourne, Philip E, Berman, Helen M

“…The Protein Data Bank (PDB; http://www.pdb.org/) is the single worldwide archive of structural data of biological macromolecules. This paper describes the…”
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A framework for scientific data modeling and automated software development by Fogh, Rasmus H., Boucher, Wayne, Vranken, Wim F., Pajon, Anne, Stevens, Tim J., Bhat, T. N., Westbrook, John, Ionides, John M. C., Laue, Ernest D.

“…Motivation: The lack of standards for storage and exchange of data is a serious hindrance for the large-scale data deposition, data mining and program…”
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Structure and Inhibition of Plasmepsin II, a Hemoglobin-Degrading Enzyme from Plasmodium falciparum by Silva, A. M., Lee, A. Y., Gulnik, S. V., Majer, P., Collins, J., Bhat, T. N., Collins, P. J., Cachau, R. E., Luker, K. E., Gluzman, I. Y., Francis, S. E., Oksman, A., Goldberg, D. E., Erickson, J. W.

“…Plasmodium falciparum is the major causative agent of malaria, a disease of worldwide importance. Resistance to current drugs such as chloroquine and…”
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Self-assembled flower-like nanostructures of InN and GaN grown by plasma-assisted molecular beam epitaxy by Kumar, Mahesh, Bhat, T. N., Rajpalke, M. K., Roul, B., Misra, P., Kukreja, L. M., Sinha, Neeraj, Kalghatgi, A. T., Krupanidhi, S. B.

“…Nanosized hexagonal InN flower-like structures were fabricated by droplet epitaxy on GaN/Si(111) and GaN flower-like nanostructure fabricated directly on…”
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Chemical compound navigator: A web-based chem-BLAST, chemical taxonomy-based search engine for browsing compounds by Prasanna, M.D., Vondrasek, Jiri, Wlodawer, Alexander, Rodriguez, H., Bhat, T. N.

“…A novel technique to annotate, query, and analyze chemical compounds has been developed and is illustrated by using the inhibitor data on HIV…”
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Structure of tyrosyl-tRNA synthetase refined at 2.3 A resolution. Interaction of the enzyme with the tyrosyl adenylate intermediate by Brick, P, Bhat, T N, Blow, D M

“…The crystal structure of tyrosyl-tRNA synthetase (EC 6.1.1.1) from Bacillus stearothermophilus has been refined to a crystallographic R-factor of 22.6% at 2.3…”
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The PDB data uniformity project by Bhat, T N, Bourne, P, Feng, Z, Gilliland, G, Jain, S, Ravichandran, V, Schneider, B, Schneider, K, Thanki, N, Weissig, H, Westbrook, J, Berman, H M

“…The Protein Data Bank (PDB; http://www.rcsb.org/pdb/) is the single worldwide archive of structural data of biological macromolecules. This paper describes the…”
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Application of InChI to curate, index, and query 3-D structures by Prasanna, M.D., Vondrasek, Jiri, Wlodawer, Alexander, Bhat, T.N.

“…The HIV structural database (HIVSDB) is a comprehensive collection of the structures of HIV protease, both of unliganded enzyme and of its inhibitor complexes…”
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Small rearrangements in structures of Fv and Fab fragments of antibody D 1.3 on antigen binding by Bhat, T. N, Bentley, G. A, Fischmann, T. O, Boulot, G, Poljak, R. J

“…THE potential use of monoclonal antibodies in immunological, chemical and clinical applications has stimulated the protein engineering and expression of Fv…”
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Bound Water Molecules and Conformational Stabilization Help Mediate an Antigen-Antibody Association by Bhat, T. Narayana, Bentley, Graham A., Boulot, Ginette, Greene, Mark I., Tello, Diana, Dall'Acqua, William, Souchon, Helene, Schwarz, Frederick P., Mariuzza, Roy A., Poljak, Robert J.

“…We report the three-dimensional structures, at 1.8-⚬A resolution, of the Fv fragment of the anti-hen egg white lysozyme antibody D1.3 in its free and…”
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Functional Characterization of the Protease of Human Endogenous Retrovirus, K10:  Can It Complement HIV-1 Protease? by Towler, Eric M, Gulnik, Sergei V, Bhat, T. N, Xie, Dong, Gustschina, Elena, Sumpter, Terry R, Robertson, Nicole, Jones, Christopher, Sauter, Marlies, Mueller-Lantzsch, Nikolaus, Debouck, Christine, Erickson, John W

“…To investigate the biochemical properties of the protease encoded by the human endogenous retrovirus, K10 (HERV-K), 213 amino acids of the 3‘-end of the HERV-K…”
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Crystal Structures of Native and Inhibited Forms of Human Cathepsin D: Implications for Lysosomal Targeting and Drug Design by Baldwin, Eric T., Bhat, T. Narayana, Gulnik, Sergei, Hosur, Madhusoodan V., Sowder, Raymond C., Cachau, Raul E., Collins, Jack, Silva, Abelardo M., Erickson, John W.

“…Cathepsin D (EC 3.4.23.5) is a lysosomal protease suspected to play important roles in protein catabolism, antigen processing, degenerative diseases, and…”
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Probing channel temperature profiles in AlxGa1−xN/GaN high electron mobility transistors on 200 mm diameter Si(111) by optical spectroscopy by Bera, L K, Liu, Y, Bera, M K, Singh, S P, Dolmanan, S B, Tan, H R, Bhat, T N, Chor, E F, Tripathy, S

“…Using micro-Raman and photoluminescence (PL) techniques, the channel temperature profile is probed in AlxGa1-xN/GaN high electron mobility transistors (HEMTs)…”
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Small rearrangements in structures of Fv and Fab fragments of antibody D1.3 on antigen binding by BHAT, T. N, BENTLEY, G. A, FISCHMANN, T. O, BOULOT, G, POLJAK, R. J

“…The potential use of monoclonal antibodies in immunological, chemical and clinical applications has stimulated the protein engineering and expression of Fv…”
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Generating Domain Terminologies using Root- and Rule-Based Terms by Collard, Jacob, Bhat, T. N., Subrahmanian, Eswaran, Sriram, Ram D., Elliot, John T., Kattner, Ursula R., Campbell, Carelyn E., Monarch, Ira

“…Motivated by the need for flexible, intuitive, reusable, and normalized terminology for guiding search and building ontologies, we present a general approach…”
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Cyclopropane-Derived Peptidomimetics. Design, Synthesis, Evaluation, and Structure of Novel HIV-1 Protease Inhibitors by Martin, Stephen F, Dorsey, Gordon O, Gane, Todd, Hillier, Michael C, Kessler, Horst, Baur, Matthias, Mathä, Barbara, Erickson, John W, Bhat, T. Nagarajan, Munshi, Sanjeev, Gulnik, Sergei V, Topol, Igor A

“…Toward establishing the general efficacy of using trisubstituted cyclopropanes as peptide mimics to stabilize extended peptide structures, the cyclopropanes…”
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