Search Results - "Bevc, Staš"

ENZO: a web tool for derivation and evaluation of kinetic models of enzyme catalyzed reactions by Bevc, Staš, Konc, Janez, Stojan, Jure, Hodošček, Milan, Penca, Matej, Praprotnik, Matej, Janežič, Dušanka

“…We describe a web tool ENZO (Enzyme Kinetics), a graphical interface for building kinetic models of enzyme catalyzed reactions. ENZO automatically generates…”
Get full text

Adaptive resolution simulations of biomolecular systems by Zavadlav, Julija, Bevc, Staš, Praprotnik, Matej

“…In this review article, we discuss and analyze some recently developed hybrid atomistic–mesoscopic solvent models for multiscale biomolecular simulations. We…”
Get full text

ESPResSo++: A modern multiscale simulation package for soft matter systems by Halverson, Jonathan D., Brandes, Thomas, Lenz, Olaf, Arnold, Axel, Bevc, Staš, Starchenko, Vitaliy, Kremer, Kurt, Stuehn, Torsten, Reith, Dirk

“…The redesigned Extensible Simulation Package for Research on Soft matter systems (ESPResSo++) is a free, open-source, parallelized, object-oriented simulation…”
Get full text

STOCK: Structure mapper and online coarse-graining kit for molecular simulations by Bevc, Staš, Junghans, Christoph, Praprotnik, Matej

“…We present a web toolkit STructure mapper and Online Coarse‐graining Kit for setting up coarse‐grained molecular simulations. The kit consists of two tools:…”
Get full text

Adaptive resolution simulation of salt solutions by Bevc, Staš, Junghans, Christoph, Kremer, Kurt, Praprotnik, Matej

“…We present an adaptive resolution simulation of aqueous salt (NaCl) solutions at ambient conditions using the adaptive resolution scheme. Our multiscale…”
Get full text

Using tries for subset and superset queries by Bevc, S., Savnik, I.

“…This paper presents a data structure for storing and querying sets. The data structure is based on tries, but because the order of elements in a set is not…”
Get full text