Search Results - "Berland, Magali"

Applications of Machine Learning in Human Microbiome Studies: A Review on Feature Selection, Biomarker Identification, Disease Prediction and Treatment by Marcos-Zambrano, Laura Judith, Karaduzovic-Hadziabdic, Kanita, Loncar Turukalo, Tatjana, Przymus, Piotr, Trajkovik, Vladimir, Aasmets, Oliver, Berland, Magali, Gruca, Aleksandra, Hasic, Jasminka, Hron, Karel, Klammsteiner, Thomas, Kolev, Mikhail, Lahti, Leo, Lopes, Marta B, Moreno, Victor, Naskinova, Irina, Org, Elin, Paciência, Inês, Papoutsoglou, Georgios, Shigdel, Rajesh, Stres, Blaz, Vilne, Baiba, Yousef, Malik, Zdravevski, Eftim, Tsamardinos, Ioannis, Carrillo de Santa Pau, Enrique, Claesson, Marcus J, Moreno-Indias, Isabel, Truu, Jaak

“…The number of microbiome-related studies has notably increased the availability of data on human microbiome composition and function. These studies provide the…”
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Machine learning approaches in microbiome research: challenges and best practices by Papoutsoglou, Georgios, Tarazona, Sonia, Lopes, Marta B., Klammsteiner, Thomas, Ibrahimi, Eliana, Eckenberger, Julia, Novielli, Pierfrancesco, Tonda, Alberto, Simeon, Andrea, Shigdel, Rajesh, Béreux, Stéphane, Vitali, Giacomo, Tangaro, Sabina, Lahti, Leo, Temko, Andriy, Claesson, Marcus J., Berland, Magali

“…Microbiome data predictive analysis within a machine learning (ML) workflow presents numerous domain-specific challenges involving preprocessing, feature…”
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High engraftment capacity of frozen ready-to-use human fecal microbiota transplants assessed in germ-free mice by Berland, Magali, Cadiou, Julie, Levenez, Florence, Galleron, Nathalie, Quinquis, Benoît, Thirion, Florence, Gauthier, Franck, Le Chatelier, Emmanuelle, Plaza Oñate, Florian, Schwintner, Carole, Rabot, Sylvie, Lepage, Patricia, Ehrlich, Dusko, Doré, Joël, Juste, Catherine

“…The number of indications for fecal microbiota transplantation is expected to rise, thus increasing the needs for production of readily available frozen or…”
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Overview of data preprocessing for machine learning applications in human microbiome research by Ibrahimi, Eliana, Lopes, Marta B, Dhamo, Xhilda, Simeon, Andrea, Shigdel, Rajesh, Hron, Karel, Stres, Blaž, D'Elia, Domenica, Berland, Magali, Marcos-Zambrano, Laura Judith

“…Although metagenomic sequencing is now the preferred technique to study microbiome-host interactions, analyzing and interpreting microbiome sequencing data…”
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Modern Metaproteomics: A Unique Tool to Characterize the Active Microbiome in Health and Diseases, and Pave the Road towards New Biomarkers-Example of Crohn's Disease and Ulcerative Colitis Flare-Ups by Henry, Céline, Bassignani, Ariane, Berland, Magali, Langella, Olivier, Sokol, Harry, Juste, Catherine

“…Thanks to the latest developments in mass spectrometry, software and standards, metaproteomics is emerging as the vital complement of metagenomics, to make…”
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A combined test for feature selection on sparse metaproteomics data-an alternative to missing value imputation by Plancade, Sandra, Berland, Magali, Blein-Nicolas, Mélisande, Langella, Olivier, Bassignani, Ariane, Juste, Catherine

“…One of the difficulties encountered in the statistical analysis of metaproteomics data is the high proportion of missing values, which are usually treated by…”
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StrainFLAIR : strain-level profiling of metagenomic samples using variation graphs by Da Silva, Kévin, Pons, Nicolas, Berland, Magali, Plaza Oñate, Florian, Almeida, Mathieu, Peterlongo, Pierre

“…Current studies are shifting from the use of single linear references to representation of multiple genomes organised in pangenome graphs or variation graphs…”
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Alteration of Gut Microbiome in Patients With Schizophrenia Indicates Links Between Bacterial Tyrosine Biosynthesis and Cognitive Dysfunction by Thirion, Florence, Speyer, Helene, Hansen, Tue Haldor, Nielsen, Trine, Fan, Yong, Le Chatelier, Emmanuelle, Fromentin, Sébastien, Berland, Magali, Plaza Oñate, Florian, Pons, Nicolas, Galleron, Nathalie, Levenez, Florence, Markó, Lajos, Birkner, Till, Jørgensen, Torben, Forslund, Sofia K., Vestergaard, Henrik, Hansen, Torben, Nordentoft, Merete, Mors, Ole, Benros, Michael E., Pedersen, Oluf, Ehrlich, Stanislav D.

“…Schizophrenia (SCZ) is a heterogeneous neuropsychiatric disorder for which current treatment has insufficient efficacy and severe adverse effects. The…”
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Reply by Berland, Magali, Ehrlich, Dusko, Breban, Maxime

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Alterations in Gut Microbiome in Cirrhosis as Assessed by Quantitative Metagenomics: Relationship With Acute-on-Chronic Liver Failure and Prognosis by Solé, Cristina, Guilly, Susie, Da Silva, Kevin, Llopis, Marta, Le-Chatelier, Emmanuelle, Huelin, Patricia, Carol, Marta, Moreira, Rebeca, Fabrellas, Núria, De Prada, Gloria, Napoleone, Laura, Graupera, Isabel, Pose, Elisa, Juanola, Adrià, Borruel, Natalia, Berland, Magali, Toapanta, David, Casellas, Francesc, Guarner, Francisco, Doré, Jöel, Solà, Elsa, Ehrlich, Stanislav Dusko, Ginès, Pere

“…Cirrhosis is associated with changes in gut microbiome composition. Although acute-on-chronic liver failure (ACLF) is the most severe clinical stage of…”
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Converting bulk sugars into prebiotics: semi-rational design of a transglucosylase with controlled selectivity by Verhaeghe, Tom, De Winter, Karel, Berland, Magali, De Vreese, Rob, D'hooghe, Matthias, Offmann, Bernard, Desmet, Tom

“…Despite the growing importance of prebiotics in nutrition and gastroenterology, their structural variety is currently still very limited. The lack of…”
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Both Disease Activity and HLA–B27 Status Are Associated With Gut Microbiome Dysbiosis in Spondyloarthritis Patients by Berland, Magali, Meslier, Victoria, Berreira Ibraim, Samar, Le Chatelier, Emmanuelle, Pons, Nicolas, Maziers, Nicolas, Thirion, Florence, Gauthier, Franck, Plaza Oñate, Florian, Furet, Jean‐Pierre, Leboime, Ariane, Said‐Nahal, Roula, Levenez, Florence, Galleron, Nathalie, Quinquis, Benoît, Langella, Philippe, Ehrlich, Stanislav Dusko, Breban, Maxime

“…Objective Gut microbiome dysbiosis has previously been reported in spondyloarthritis (SpA) patients and could be critically involved in the pathogenesis of…”
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Benefits of Iterative Searches of Large Databases to Interpret Large Human Gut Metaproteomic Data Sets by Bassignani, Ariane, Plancade, Sandra, Berland, Magali, Blein-Nicolas, Melisande, Guillot, Alain, Chevret, Didier, Moritz, Chloé, Huet, Sylvie, Rizkalla, Salwa, Clément, Karine, Doré, Joël, Langella, Olivier, Juste, Catherine

“…The gut microbiota are increasingly considered as a main partner of human health. Metaproteomics enables us to move from the functional potential revealed by…”
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Diet Supplementation with NUTRIOSE, a Resistant Dextrin, Increases the Abundance of Parabacteroides distasonis in the Human Gut by Thirion, Florence, Da Silva, Kévin, Plaza Oñate, Florian, Alvarez, Anne‐Sophie, Thabuis, Clémentine, Pons, Nicolas, Berland, Magali, Le Chatelier, Emmanuelle, Galleron, Nathalie, Levenez, Florence, Vergara, Coralie, Chevallier, Hélène, Guérin‐Deremaux, Laetitia, Doré, Joël, Ehrlich, Stanislav D.

“…Scope An imbalance of the gut microbiota (“dysbiosis”) is associated with numerous chronic diseases, and its modulation is a promising novel therapeutic…”
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Alterations in Gut Microbiome in Cirrhosis as Assessed by Quantitative Metagenomics: Relationship With Acute-on-Chronic Liver Failure and Prognosis by Solé, Cristina, Guilly, Susie, da Silva, Kevin, Llopis, Marta, Le-Chatelier, Emmanuelle, Huelin, Patricia, Carol, Marta, Moreira, Rebeca, Fabrellas, Núria, de Prada, Gloria, Napoleone, Laura, Graupera, Isabel, Pose, Elisa, Juanola, Adrià, Borruel, Natalia, Berland, Magali, Toapanta, David, Casellas, Francesc, Guarner, Francisco, Dore, Joel, Solà, Elsa, Ehrlich, Stanislav Dusko, Ginès, Pere

“…Background and aims: Cirrhosis is associated with changes in gut microbiome composition. Although acute-on-chronic liver failure (ACLF) is the most severe…”
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