Search Results - "Bergström Lind, Sara"

Evaluation of affinity-purification coupled to mass spectrometry approaches for capture of short linear motif-based interactions by Kassa, Eszter, Jamshidi, Sara, Mihalič, Filip, Simonetti, Leandro, Kliche, Johanna, Jemth, Per, Sara Bergström Lind, Ivarsson, Ylva

“…Low affinity and transient protein-protein interactions, such as short linear motif (SLiM)-based interactions, require dedicated experimental tools for…”
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Interleukin-13 Treatment of Living Lung Tissue Model Alters the Metabolome and Proteome-A Nano-DESI MS Metabolomics and Shotgun Proteomics Study by Tóth, Gábor, Golubova, Anastasia, Falk, Alexander, Lind, Sara Bergström, Nicholas, Mark, Lanekoff, Ingela

“…Asthma is a chronic respiratory disease with one of the largest numbers of cases in the world; thus, constant investigation and technical development are…”
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Qualitative analysis of antibody-drug conjugates (ADCs): an experimental comparison of analytical techniques of cysteine-linked ADCs by Källsten, Malin, Hartmann, Rafael, Artemenko, Konstantin, Lind, Sara Bergström, Lehmann, Fredrik, Bergquist, Jonas

“…Antibody-drug conjugates (ADCs) are an emerging type of biotherapeutics that utilize multiple tissue-specific antibodies combined with a range of linker…”
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Characterization of the Giardia intestinalis secretome during interaction with human intestinal epithelial cells: The impact on host cells by Ma'ayeh, Showgy Y, Liu, Jingyi, Peirasmaki, Dimitra, Hörnaeus, Katarina, Bergström Lind, Sara, Grabherr, Manfred, Bergquist, Jonas, Svärd, Staffan G

“…Giardia intestinalis is a non-invasive protozoan parasite that causes giardiasis in humans, the most common form of parasite-induced diarrhea. Disease…”
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The Human Adenovirus 2 Transcriptome: an Amazing Complexity of Alternatively Spliced mRNAs by Westergren Jakobsson, Amanda, Segerman, Bo, Wallerman, Ola, Bergström Lind, Sara, Zhao, Hongxing, Rubin, Carl-Johan, Pettersson, Ulf, Akusjärvi, Göran

“…We used the Nanopore long-read sequencing platform to demonstrate how amazingly complex the human adenovirus type 2 (Ad2) transcriptome is, with a flexible…”
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Phosphorylation Time‐Course Study of the Response during Adenovirus Type 2 Infection by Valdés, Alberto, Zhao, Hongxing, Pettersson, Ulf, Lind, Sara Bergström

“…PTMs such as phosphorylations are usually involved in signal transduction pathways. To investigate the temporal dynamics of phosphoproteome changes upon viral…”
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Parallel Proteomic Workflow for Mass Spectrometric Analysis of Tissue Samples Preserved by Different Methods by Holfeld, Aleš, Valdés, Alberto, Malmström, Per-Uno, Segersten, Ulrika, Lind, Sara Bergström

“…Formalin-fixed and paraffin-embedded (FFPE) and optimal cutting temperature (OCT)-embedded and frozen tissue specimens in biobanks are highly valuable in…”
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Plasma-derived extracellular vesicles from myocardial infarction patients inhibits tumor necrosis factor-alpha induced cardiac cell death by Khandagale, Avinash, Lindahl, Bertil, Lind, Sara Bergström, Shevchenko, Ganna, Siegbahn, Agneta, Christersson, Christina

“…Extracellular vesicles (EVs) derived exogenously from pluripotent stem cells or endogenously from healthy human serum exert cardioprotective effects after…”
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Potential Use of Supercharging Agents for Improved Mass Spectrometric Analysis of Monoclonal Antibodies and Antibody–Drug Conjugates by Källsten, Malin, Visanu, Diana, Pijnappel, Matthijs, Lehmann, Fredrik, Bergquist, Jonas, Lind, Sara Bergström, Kovac, Lucia

“…The addition of supercharging (SC) reagents in electrospray ionization coupled mass spectrometry (ESI-MS) has demonstrated several advantages for protein…”
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Time-resolved proteomics of adenovirus infected cells by Valdés, Alberto, Zhao, Hongxing, Pettersson, Ulf, Lind, Sara Bergström

“…Viral infections cause large problems in the world and deeper understanding of the disease mechanisms is needed. Here we present an analytical strategy to…”
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Magnetic Beads for Desalting of Monoclonal Antibodies and Antibody–Drug Conjugates by Källsten, Malin, Ghorasaini, Mohan, Hartmann, Rafael, Lehmann, Fredrik, Bergquist, Jonas, Kovac, Lucia, Lind, Sara Bergström

“…Characterization of antibody–drug conjugates (ADCs) using mass spectrometry (MS) is important in drug discovery and formulation development and as part of the…”
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Proteomic comparison between different tissue preservation methods for identification of promising biomarkers of urothelial bladder cancer by Valdés, Alberto, Bitzios, Athanasios, Kassa, Eszter, Shevchenko, Ganna, Falk, Alexander, Malmström, Per-Uno, Dragomir, Anca, Segersten, Ulrika, Lind, Sara Bergström

“…Samples in biobanks are generally preserved by formalin-fixation and paraffin-embedding (FFPE) and/or optimal cutting temperature compound (OCT)-embedding and…”
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Posttranscriptional Regulation in Adenovirus Infected Cells by Zhao, Hongxing, Konzer, Anne, Mi, Jia, Chen, Moashan, Pettersson, Ulf, Lind, Sara Bergström

“…A deeper understanding of how viruses reprogram their hosts for production of progeny is needed to combat infections. Most knowledge on the regulation of…”
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Distinct temporal changes in host cell lncRNA expression during the course of an adenovirus infection by Zhao, Hongxing, Chen, Maoshan, Lind, Sara Bergström, Pettersson, Ulf

“…Abstract The deregulation of cellular long non-coding RNA (lncRNA) expression during a human adenovirus infection was studied by deep sequencing. Expression of…”
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Inhibition properties of free and conjugated leupeptin analogues by Billinger, Erika, Viljanen, Johan, Lind, Sara Bergström, Johansson, Gunnar

“…Leupeptin is a naturally occurring inhibitor of various proteases, in particular serine proteases. Following its discovery, the inhibitory properties of…”
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Application of triple quadrupole mass spectrometry for the characterization of antibody–drug conjugates by Källsten, Malin, Pijnappel, Matthijs, Hartmann, Rafael, Lehmann, Fredrik, Kovac, Lucia, Lind, Sara Bergström, Bergquist, Jonas

“…Antibody–drug conjugates (ADCs) are an inherently heterogeneous class of biotherapeutics, the development of which requires extensive characterization…”
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Proteomic analysis of urinary biomarker candidates for nonmuscle invasive bladder cancer by Lindén, Mårten, Lind, Sara Bergström, Mayrhofer, Corina, Segersten, Ulrika, Wester, Kenneth, Lyutvinskiy, Yaroslav, Zubarev, Roman, Malmström, Per-Uno, Pettersson, Ulf

“…Nonmuscle invasive tumors of the bladder often recur and thereby bladder cancer patients need regular re‐examinations which are invasive, unpleasant, and…”
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Identification of the adenovirus type 2 C-168 protein by Gromova, Arina, Zhao, Hongxing, Konzer, Anne, Falk, Alexander, Pettersson, Ulf, Lind, Sara Bergström

“…•Identification of the adenovirus type 2 C-168 by mass spectrometry.•Molecular weight of C-168 corresponds to prediction from open reading frame.•Candidte RNA…”
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A flow-through nanoporous alumina trypsin bioreactor for mass spectrometry peptide fingerprinting by Kjellander, Marcus, Billinger, Erika, Ramachandraiah, Harisha, Boman, Mats, Bergström Lind, Sara, Johansson, Gunnar

“…Mass spectrometry-based proteomics benefits from efficient digestion of protein samples. In this study, trypsin was immobilized on nanoporous anodized alumina…”
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Transcriptomic and proteomic analyses reveal new insights into the regulation of immune pathways during adenovirus type 2 infection by Zhao, Hongxing, Chen, Maoshan, Valdés, Alberto, Lind, Sara Bergström, Pettersson, Ulf

“…Human adenovirus (Ad) infection leads to the changes of host cell gene expression and biosynthetic processes. Transcriptomics in adenovirus type 2…”
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