Search Results - "Berendzen, J."

Coping Without Foundations: On Dreyfus's Use of Merleau-Ponty by Berendzen, J. C.

“…Hubert Dreyfus has recently invoked the work of Maurice Merleau-Ponty in criticizing the 'Myth of the Mental'. In criticizing that supposed myth, Dreyfus…”
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Recurrent perineal hernia repair: a novel approach by Berendzen, J., Copas, P.

“…Purpose Postoperative perineal hernias are rare complications from procedures, which compromise the pelvic floor, mainly abdominoperineal resection,…”
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Suffering and theory: Max Horkheimer’s early essays and contemporary moral philosophy by Berendzen, J.C.

“…Max Horkheimer does not generally receive the scholarly attention given to other ‘Frankfurt School’ figures. This is in part because his early work seems…”
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Postmetaphysical Thinking or Refusal of Thought? Max Horkheimer's Materialism as Philosophical Stance by Berendzen, J. C.

“…Frankfurt School critical theory has long opposed metaphysical philosophy because it ignores suffering and injustice. In the face of such criticism, proponents…”
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Institutional Design and Public Space: Hegel, Architecture, and Democracy by Berendzen, J. C.

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The TB structural genomics consortium: a resource for Mycobacterium tuberculosis biology by Terwilliger, T.C, Park, M.S, Waldo, G.S, Berendzen, J, Hung, L.-W, Kim, C.-Y, Smith, C.V, Sacchettini, J.C, Bellinzoni, M, Bossi, R, De Rossi, E, Mattevi, A, Milano, A, Riccardi, G, Rizzi, M, Roberts, M.M, Coker, A.R, Fossati, G, Mascagni, P, Coates, A.R.M, Wood, S.P, Goulding, C.W, Apostol, M.I, Anderson, D.H, Gill, H.S, Eisenberg, D.S, Taneja, B, Mande, S, Pohl, E, Lamzin, V, Tucker, P, Wilmanns, M, Colovos, C, Meyer-Klaucke, W, Munro, A.W, McLean, K.J, Marshall, K.R, Leys, D, Yang, J.K, Yoon, H.-J, Lee, B.I, Lee, M.G, Kwak, J.E, Han, B.W, Lee, J.Y, Baek, S.-H, Suh, S.W, Komen, M.M, Arcus, V.L, Baker, E.N, Lott, J.S, Jacobs, W, Alber, T, Rupp, B

“…The TB Structural Genomics Consortium is an organization devoted to encouraging, coordinating, and facilitating the determination and analysis of structures of…”
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Bayesian Correlated MAD Phasing by Terwilliger, T. C., Berendzen, J.

“…A Bayesian treatment for phase calculation in the multiwavelength anomalous diffraction (MAD) technique is presented. This approach explicitly treats effects…”
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Class‐directed structure determination: Foundation for a protein structure initiative by Terwilliger, Thomas C., Waldo, Geoffrey, Peat, Thomas S., Newman, Janet M., And, Kelvin Chu, Berendzen, Joel

“…The recent sequencing of many complete genomes, combined with the development of methods that allow rapid structure determination for many proteins, has…”
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Protein States and Proteinquakes by Ansari, Anjum, Berendzen, Joel, Bowne, Samuel F., Frauenfelder, Hans, Icko E. T. Iben, Sauke, Todd B., Shyamsunder, Erramilli, Young, Robert D.

“…After photodissociation of carbon monoxide bound to myoglobin, the protein relaxes to the deoxy equilibrium structure in a quake-like motion. Investigation of…”
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AlphaFold illuminates half of the dark human proteins by Binder, Jessica L., Berendzen, Joel, Stevens, Amy O., He, Yi, Wang, Jian, Dokholyan, Nikolay V., Oprea, Tudor I.

“…We investigate the use of confidence scores to evaluate the accuracy of a given AlphaFold (AF2) protein model for drug discovery. Prediction of accuracy is…”
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unified model of protein dynamics by Frauenfelder, Hans, Chen, Guo, Berendzen, Joel, Fenimore, Paul W, Jansson, Helén, McMahon, Benjamin H, Stroe, Izabela R, Swenson, Jan, Young, Robert D

“…Protein functions require conformational motions. We show here that the dominant conformational motions are slaved by the hydration shell and the bulk solvent…”
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Temperature-Derivative Spectroscopy: A Tool for Protein Dynamics by Berendzen, Joel, Braunstein, David

“…A relaxation method that measures the derivative of a population with respect to temperature is introduced and used to study the recombination of CO to sperm…”
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Automated MAD and MIR structure solution by Terwilliger, Thomas C., Berendzen, Joel

“…Obtaining an electron‐density map from X‐ray diffraction data can be difficult and time‐consuming even after the data have been collected, largely because MIR…”
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JON ALTSCHUL, 1981–2016 by Berendzen, J. C., Mui, Constance

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Ligand Binding to Synthetic Mutant Myoglobin (His-E7 → Gly): Role of the Distal Histidine by Braunstein, D., Ansari, A., Berendzen, J., Cowen, B. R., Egeberg, K. D., Frauenfelder, H., Hong, M. K., Ormos, P., Sauke, T. B., Scholl, R., Schulte, A., Sligar, S. G., Springer, B. A., Steinbach, P. J., Young, R. D.

“…Low-temperature flash photolysis with IR and visible spectroscopy was used to probe the influence of the distal histidine His-64(E7) of sperm-whale myoglobin…”
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Rapid protein-folding assay using green fluorescent protein by Waldo, Geoffrey S, Standish, Blake M, Berendzen, Joel, Terwilliger, Thomas C

“…Formation of the chromophore of green fluorescent protein (GFP) depends on the correct folding of the protein. We constructed a "folding reporter" vector, in…”
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The Catalytic Pathway of Cytochrome P450cam at Atomic Resolution by Schlichting, Ilme, Berendzen, Joel, Chu, Kelvin, Stock, Ann M., Maves, Shelley A., Benson, David E., Sweet, Robert M., Ringe, Dagmar, Petsko, Gregory A., Sligar, Stephen G.

“…Members of the cytochrome P450 superfamily catalyze the addition of molecular oxygen to nonactivated hydrocarbons at physiological temperature-a reaction that…”
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Crystal Structures of Myoglobin-Ligand Complexes at Near-Atomic Resolution by Vojtěchovský, Jaroslav, Chu, Kelvin, Berendzen, Joel, Sweet, Robert M., Schlichting, Ilme

“…We have used x-ray crystallography to determine the structures of sperm whale myoglobin (Mb) in four different ligation states (unligated, ferric aquomet,…”
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Structural alterations for proton translocation in the M state of wild-type bacteriorhodopsin by Büldt, Georg, Sass, Hans Jürgen, Gessenich, Ralf, Hehn, Dominic, Neff, Dirk, Schlesinger, Ramona, Berendzen, Joel, Ormos, Pal

“…The transport of protons across membranes is an important process in cellular bioenergetics. The light-driven proton pump bacteriorhodopsin is the…”
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Structure of a ligand-binding intermediate in wild-type carbonmonoxy myoglobin by Schlichting, Ilme, Chu, Kelvin, Vojtchovský, Jaroslav, McMahon, Benjamin H, Sweet, Robert M, Berendzen, Joel

“…Small molecules such as NO, O2, CO or H2 are important biological ligands that bind to metalloproteins to function crucially in processes such as signal…”
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