Search Results - "Benazzo, Andrea"

Survival and divergence in a small group: The extraordinary genomic history of the endangered Apennine brown bear stragglers by Benazzo, Andrea, Trucchi, Emiliano, Cahill, James A., Delser, Pierpaolo Maisano, Mona, Stefano, Fumagalli, Matteo, Bunnefeld, Lynsey, Cornetti, Luca, Ghirotto, Silvia, Girardi, Matteo, Ometto, Lino, Panziera, Alex, Rota-Stabelli, Omar, Zanetti, Enrico, Karamanlidis, Alexandros, Groff, Claudio, Paule, Ladislav, Gentile, Leonardo, Vilà, Carles, Vicario, Saverio, Boitani, Luigi, Orlando, Ludovic, Fuselli, Silvia, Vernesi, Cristiano, Shapiro, Beth, Ciucci, Paolo, Bertorelle, Giorgio

“…About 100 km east of Rome, in the central Apennine Mountains, a critically endangered population of ∼50 brown bears live in complete isolation. Mating outside…”
Get full text

Selection and adaptive introgression guided the complex evolutionary history of the European common bean by Bellucci, Elisa, Benazzo, Andrea, Xu, Chunming, Bitocchi, Elena, Rodriguez, Monica, Alseekh, Saleh, Di Vittori, Valerio, Gioia, Tania, Neumann, Kerstin, Cortinovis, Gaia, Frascarelli, Giulia, Murube, Ester, Trucchi, Emiliano, Nanni, Laura, Ariani, Andrea, Logozzo, Giuseppina, Shin, Jin Hee, Liu, Chaochih, Jiang, Liang, Ferreira, Juan José, Campa, Ana, Attene, Giovanna, Morrell, Peter L., Bertorelle, Giorgio, Graner, Andreas, Gepts, Paul, Fernie, Alisdair R., Jackson, Scott A., Papa, Roberto

“…Domesticated crops have been disseminated by humans over vast geographic areas. Common bean ( Phaseolus vulgaris L.) was introduced in Europe after 1492. Here,…”
Get full text

Suppressing gain-of-function proteins via CRISPR/Cas9 system in SCA1 cells by Pappadà, Mariangela, Bonuccelli, Ottavia, Buratto, Mattia, Fontana, Riccardo, Sicurella, Mariaconcetta, Caproni, Anna, Fuselli, Silvia, Benazzo, Andrea, Bertorelli, Roberto, De Sanctis, Veronica, Cavallerio, Paolo, Simioni, Valentina, Tugnoli, Valeria, Salvatori, Francesca, Marconi, Peggy

“…SCAs are autosomal dominant neurodegenerative disorders caused by a gain-of-function protein with toxic activities, containing an expanded polyQ tract in the…”
Get full text

Decreased Nucleotide and Expression Diversity and Modified Coexpression Patterns Characterize Domestication in the Common Bean by Bellucci, Elisa, Bitocchi, Elena, Ferrarini, Alberto, Benazzo, Andrea, Biagetti, Eleonora, Klie, Sebastian, Minio, Andrea, Rau, Domenico, Rodriguez, Monica, Panziera, Alex, Venturini, Luca, Attene, Giovanna, Albertini, Emidio, Jackson, Scott A., Nanni, Laura, Fernie, Alisdair R., Nikoloski, Zoran, Bertorelle, Giorgio, Delledonne, Massimo, Papa, Roberto

“…Using RNA sequencing technology and de novo transcriptome assembly, we compared representative sets of wild and domesticated accessions of common bean…”
Get full text

Author Correction: Adaptive gene loss in the common bean pan-genome during range expansion and domestication by Cortinovis, Gaia, Vincenzi, Leonardo, Anderson, Robyn, Marturano, Giovanni, Marsh, Jacob Ian, Bayer, Philipp Emanuel, Rocchetti, Lorenzo, Frascarelli, Giulia, Lanzavecchia, Giovanna, Pieri, Alice, Benazzo, Andrea, Bellucci, Elisa, Di Vittori, Valerio, Nanni, Laura, Ferreira Fernández, Juan José, Rossato, Marzia, Aguilar, Orlando Mario, Morrell, Peter Laurent, Rodriguez, Monica, Gioia, Tania, Neumann, Kerstin, Alvarez Diaz, Juan Camilo, Gratias, Ariane, Klopp, Christophe, Bitocchi, Elena, Geffroy, Valérie, Delledonne, Massimo, Edwards, David, Papa, Roberto

Get full text

Leukocyte Esterase Strip Test Can Predict Subsequent Failure Following Reimplantation in Patients With Periprosthetic Joint Infection by Kheir, Michael M., MD, Ackerman, Colin T., BS, Tan, Timothy L., MD, Benazzo, Andrea, MS, Tischler, Eric H., BA, Parvizi, Javad, MD, FRCS

“…Abstract Background Leukocyte esterase (LE) strip test is an accurate marker for diagnosing periprosthetic joint infection (PJI). This study aims to determine…”
Get full text

Full circumpolar migration ensures evolutionary unity in the Emperor penguin by Cristofari, Robin, Bertorelle, Giorgio, Ancel, André, Benazzo, Andrea, Le Maho, Yvon, Ponganis, Paul J., Stenseth, Nils Chr, Trathan, Phil N., Whittington, Jason D., Zanetti, Enrico, Zitterbart, Daniel P., Le Bohec, Céline, Trucchi, Emiliano

“…Defining reliable demographic models is essential to understand the threats of ongoing environmental change. Yet, in the most remote and threatened areas,…”
Get full text

Genetic diversity of CHC22 clathrin impacts its function in glucose metabolism by Fumagalli, Matteo, Camus, Stephane M, Diekmann, Yoan, Burke, Alice, Camus, Marine D, Norman, Paul J, Joseph, Agnel, Abi-Rached, Laurent, Benazzo, Andrea, Rasteiro, Rita, Mathieson, Iain, Topf, Maya, Parham, Peter, Thomas, Mark G, Brodsky, Frances M

“…CHC22 clathrin plays a key role in intracellular membrane traffic of the insulin-responsive glucose transporter GLUT4 in humans. We performed population…”
Get full text

Candidate genes involved in the evolution of viviparity: a RAD sequencing experiment in the lizard Zootoca vivipara (Squamata: Lacertidae) by Cornetti, Luca, Griffith, Oliver W, Benazzo, Andrea, Panziera, Alex, Whittington, Camilla M, Thompson, Michael B, Vernesi, Cristiano, Bertorelle, Giorgio

“…Abstract Viviparity has evolved from oviparity at least 150 independent times in vertebrates. More than 80% of these transitions have occurred in squamate…”
Get full text

C6orf10 Low-Frequency and Rare Variants in Italian Multiple Sclerosis Patients by Ziliotto, Nicole, Marchetti, Giovanna, Scapoli, Chiara, Bovolenta, Matteo, Meneghetti, Silvia, Benazzo, Andrea, Lunghi, Barbara, Balestra, Dario, Laino, Lorenza Anna, Bozzini, Nicolò, Guidi, Irene, Salvi, Fabrizio, Straudi, Sofia, Gemmati, Donato, Menegatti, Erica, Zamboni, Paolo, Bernardi, Francesco

“…In light of the complex nature of multiple sclerosis (MS) and the recently estimated contribution of low-frequency variants into disease, decoding its genetic…”
Get full text

The Biarzo case in northern Italy: is the temporal dynamic of swine mitochondrial DNA lineages in Europe related to domestication? by Vai, Stefania, Vilaça, Sibelle Torres, Romandini, Matteo, Benazzo, Andrea, Visentini, Paola, Modolo, Marta, Bertolini, Marco, MacQueen, Peggy, Austin, Jeremy, Cooper, Alan, Caramelli, David, Lari, Martina, Bertorelle, Giorgio

“…Genetically-based reconstructions of the history of pig domestication in Europe are based on two major pillars: 1) the temporal changes of mitochondrial DNA…”
Get full text

Reconstruction of Acinetobacter johnsonii ICE_NC genome using hybrid de novo genome assemblies and identification of the 12α‐hydroxysteroid dehydrogenase gene by Favale, Nicoletta, Costa, Stefania, Scapoli, Chiara, Carrieri, Alberto, Sabbioni, Silvia, Tamburini, Elena, Benazzo, Andrea, Bernacchia, Giovanni

“…Aims The role of a Acinetobacter johnsonii strain, isolated from a soil sample, in the biotransformation of bile acids (BAs) was already described but the…”
Get full text

Distinguishing among complex evolutionary models using unphased whole‐genome data through random forest approximate Bayesian computation by Ghirotto, Silvia, Vizzari, Maria Teresa, Tassi, Francesca, Barbujani, Guido, Benazzo, Andrea

“…Inferring past demographic histories is crucial in population genetics, and the amount of complete genomes now available should in principle facilitate this…”
Get full text

Population structure, genomic diversity and demographic history of Komodo dragons inferred from whole‐genome sequencing by Iannucci, Alessio, Benazzo, Andrea, Natali, Chiara, Arida, Evy Ayu, Zein, Moch Samsul Arifin, Jessop, Tim S., Bertorelle, Giorgio, Ciofi, Claudio

“…Population and conservation genetics studies have greatly benefited from the development of new techniques and bioinformatic tools associated with…”
Get full text

A randomized comparison between Accuro and palpation-guided spinal anesthesia for obese patients undergoing orthopedic surgery by Ghisi, Daniela, Tomasi, Marco, Giannone, Sandra, Luppi, Alessandra, Aurini, Lucia, Toccaceli, Letizia, Benazzo, Andrea, Bonarelli, Stefano

“…BackgroundAlthough obese patients benefit from neuraxial anesthesia, technical difficulties often discourage its use. The current randomized trial compared…”
Get full text

Across language families: Genome diversity mirrors linguistic variation within Europe by Longobardi, Giuseppe, Ghirotto, Silvia, Guardiano, Cristina, Tassi, Francesca, Benazzo, Andrea, Ceolin, Andrea, Barbujani, Guido

“…ABSTRACT Objectives: The notion that patterns of linguistic and biological variation may cast light on each other and on population histories dates back to…”
Get full text

Divergence and hybridization in sea turtles: Inferences from genome data show evidence of ancient gene flow between species by Vilaça, Sibelle Torres, Piccinno, Riccardo, Rota‐Stabelli, Omar, Gabrielli, Maëva, Benazzo, Andrea, Matschiner, Michael, Soares, Luciano S., Bolten, Alan B., Bjorndal, Karen A., Bertorelle, Giorgio

“…Reconstructing past events of hybridization and population size changes are required to understand speciation mechanisms and current patterns of genetic…”
Get full text

A Revised Model of Anatomically Modern Human Expansions Out of Africa through a Machine Learning Approximate Bayesian Computation Approach by Vizzari, Maria Teresa, Benazzo, Andrea, Barbujani, Guido, Ghirotto, Silvia

“…There is a wide consensus in considering Africa as the birthplace of anatomically modern humans (AMH), but the dispersal pattern and the main routes followed…”
Get full text

4P: fast computing of population genetics statistics from large DNA polymorphism panels by Benazzo, Andrea, Panziera, Alex, Bertorelle, Giorgio

“…Summary Massive DNA sequencing has significantly increased the amount of data available for population genetics and molecular ecology studies. However, the…”
Get full text

Tracing Eastern Wolf Origins From Whole-Genome Data in Context of Extensive Hybridization by Vilaça, Sibelle T, Donaldson, Michael E, Benazzo, Andrea, Wheeldon, Tyler J, Vizzari, Maria Teresa, Bertorelle, Giorgio, Patterson, Brent R, Kyle, Christopher J

“…Abstract Southeastern Canada is inhabited by an amalgam of hybridizing wolf-like canids, raising fundamental questions regarding their taxonomy, origins, and…”
Get full text