Search Results - "Bayer, Philipp E."

Pangenomics Comes of Age: From Bacteria to Plant and Animal Applications by Golicz, Agnieszka A., Bayer, Philipp E., Bhalla, Prem L., Batley, Jacqueline, Edwards, David

“…The pangenome refers to a collection of genomic sequence found in the entire species or population rather than in a single individual; the sequence can be…”
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Current status of structural variation studies in plants by Yuan, Yuxuan, Bayer, Philipp E., Batley, Jacqueline, Edwards, David

“…Summary Structural variations (SVs) including gene presence/absence variations and copy number variations are a common feature of genomes in plants and,…”
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The pangenome of hexaploid bread wheat by Montenegro, Juan D., Golicz, Agnieszka A., Bayer, Philipp E., Hurgobin, Bhavna, Lee, HueyTyng, Chan, Chon‐Kit Kenneth, Visendi, Paul, Lai, Kaitao, Doležel, Jaroslav, Batley, Jacqueline, Edwards, David

“…Summary There is an increasing understanding that variation in gene presence–absence plays an important role in the heritability of agronomic traits; however,…”
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Characterization of disease resistance genes in the Brassica napus pangenome reveals significant structural variation by Dolatabadian, Aria, Bayer, Philipp E., Tirnaz, Soodeh, Hurgobin, Bhavna, Edwards, David, Batley, Jacqueline

“…Summary Methods based on single nucleotide polymorphism (SNP), copy number variation (CNV) and presence/absence variation (PAV) discovery provide a valuable…”
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Fast-forward breeding for a food-secure world by Varshney, Rajeev K., Bohra, Abhishek, Roorkiwal, Manish, Barmukh, Rutwik, Cowling, Wallace A., Chitikineni, Annapurna, Lam, Hon-Ming, Hickey, Lee T., Croser, Janine S., Bayer, Philipp E., Edwards, David, Crossa, José, Weckwerth, Wolfram, Millar, Harvey, Kumar, Arvind, Bevan, Michael W., Siddique, Kadambot H.M.

“…Crop production systems need to expand their outputs sustainably to feed a burgeoning human population. Advances in genome sequencing technologies combined…”
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The pangenome of an agronomically important crop plant Brassica oleracea by Golicz, Agnieszka A., Bayer, Philipp E., Barker, Guy C., Edger, Patrick P., Kim, HyeRan, Martinez, Paula A., Chan, Chon Kit Kenneth, Severn-Ellis, Anita, McCombie, W. Richard, Parkin, Isobel A. P., Paterson, Andrew H., Pires, J. Chris, Sharpe, Andrew G., Tang, Haibao, Teakle, Graham R., Town, Christopher D., Batley, Jacqueline, Edwards, David

“…There is an increasing awareness that as a result of structural variation, a reference sequence representing a genome of a single individual is unable to…”
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Resources for image-based high-throughput phenotyping in crops and data sharing challenges by Danilevicz, Monica F, Bayer, Philipp E, Nestor, Benjamin J, Bennamoun, Mohammed, Edwards, David

“…High-throughput phenotyping (HTP) platforms are capable of monitoring the phenotypic variation of plants through multiple types of sensors, such as red green…”
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Improvements in Genomic Technologies: Application to Crop Genomics by Yuan, Yuxuan, Bayer, Philipp E, Batley, Jacqueline, Edwards, David

“…Second-generation sequencing (SGS) has advanced the study of crop genomes and has provided insights into diversity and evolution. However, repetitive DNA…”
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Variation in abundance of predicted resistance genes in the Brassica oleracea pangenome by Bayer, Philipp E., Golicz, Agnieszka A., Tirnaz, Soodeh, Chan, Chon‐Kit Kenneth, Edwards, David, Batley, Jacqueline

“…Summary Brassica oleracea is an important agricultural species encompassing many vegetable crops including cabbage, cauliflower, broccoli and kale; however, it…”
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Homoeologous exchange is a major cause of gene presence/absence variation in the amphidiploid Brassica napus by Hurgobin, Bhavna, Golicz, Agnieszka A., Bayer, Philipp E., Chan, Chon‐Kit Kenneth, Tirnaz, Soodeh, Dolatabadian, Aria, Schiessl, Sarah V., Samans, Birgit, Montenegro, Juan D., Parkin, Isobel A. P., Pires, J. Chris, Chalhoub, Boulos, King, Graham J., Snowdon, Rod, Batley, Jacqueline, Edwards, David

“…Summary Homoeologous exchanges (HEs) have been shown to generate novel gene combinations and phenotypes in a range of polyploid species. Gene presence/absence…”
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openSNP--a crowdsourced web resource for personal genomics by Greshake, Bastian, Bayer, Philipp E, Rausch, Helge, Reda, Julia

“…Genome-Wide Association Studies are widely used to correlate phenotypic traits with genetic variants. These studies usually compare the genetic variation…”
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Maize Yield Prediction at an Early Developmental Stage Using Multispectral Images and Genotype Data for Preliminary Hybrid Selection by Danilevicz, Monica F., Bayer, Philipp E., Boussaid, Farid, Bennamoun, Mohammed, Edwards, David

“…Assessing crop production in the field often requires breeders to wait until the end of the season to collect yield-related measurements, limiting the pace of…”
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Assembly and comparison of two closely related Brassica napus genomes by Bayer, Philipp E., Hurgobin, Bhavna, Golicz, Agnieszka A., Chan, Chon‐Kit Kenneth, Yuan, Yuxuan, Lee, HueyTyng, Renton, Michael, Meng, Jinling, Li, Ruiyuan, Long, Yan, Zou, Jun, Bancroft, Ian, Chalhoub, Boulos, King, Graham J., Batley, Jacqueline, Edwards, David

“…Summary As an increasing number of plant genome sequences become available, it is clear that gene content varies between individuals, and the challenge arises…”
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Seafood label quality and mislabelling rates hamper consumer choices for sustainability in Australia by Cundy, Megan E., Santana-Garcon, Julia, McLennan, Alexander G., Ayad, Marcelle E., Bayer, Philipp E., Cooper, Madalyn, Corrigan, Shannon, Harrison, Emily, Wilcox, Chris

“…Seafood mislabelling and species substitution, compounded by a convoluted seafood supply chain with significant traceability challenges, hinder efforts towards…”
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Frontiers in Dissecting and Managing Brassica Diseases: From Reference-Based RGA Candidate Identification to Building Pan-RGAomes by Zhang, Yueqi, Thomas, William, Bayer, Philipp E, Edwards, David, Batley, Jacqueline

“…The genus contains abundant economically important vegetable and oilseed crops, which are under threat of diseases caused by fungal, bacterial and viral…”
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Plant Genotype to Phenotype Prediction Using Machine Learning by Danilevicz, Monica F, Gill, Mitchell, Anderson, Robyn, Batley, Jacqueline, Bennamoun, Mohammed, Bayer, Philipp E, Edwards, David

“…Genomic prediction tools support crop breeding based on statistical methods, such as the genomic best linear unbiased prediction (GBLUP). However, these tools…”
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Machine learning models outperform deep learning models, provide interpretation and facilitate feature selection for soybean trait prediction by Gill, Mitchell, Anderson, Robyn, Hu, Haifei, Bennamoun, Mohammed, Petereit, Jakob, Valliyodan, Babu, Nguyen, Henry T, Batley, Jacqueline, Bayer, Philipp E, Edwards, David

“…Recent growth in crop genomic and trait data have opened opportunities for the application of novel approaches to accelerate crop improvement. Machine learning…”
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The application of pangenomics and machine learning in genomic selection in plants by Bayer, Philipp E., Petereit, Jakob, Danilevicz, Monica Furaste, Anderson, Robyn, Batley, Jacqueline, Edwards, David

“…Genomic selection approaches have increased the speed of plant breeding, leading to growing crop yields over the last decade. However, climate change is…”
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High intraspecific diversity of Restorer‐of‐fertility‐like genes in barley by Melonek, Joanna, Zhou, Ruonan, Bayer, Philipp E., Edwards, David, Stein, Nils, Small, Ian

“…SUMMARY Nuclear restorer of fertility (Rf) genes suppress the effects of mitochondrial genes causing cytoplasmic male sterility (CMS), a condition in which…”
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The pangenome of banana highlights differences between genera and genomes by Rijzaani, Habib, Bayer, Philipp E., Rouard, Mathieu, Doležel, Jaroslav, Batley, Jacqueline, Edwards, David

“…Banana (Musaceae family) has a complex genetic history and includes a genus Musa with a variety of cultivated clones with edible fruits, Ensete species that…”
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