Search Results - "Bassel, George W."

Information Processing and Distributed Computation in Plant Organs by Bassel, George W.

“…The molecular networks plant cells evolved to tune their development in response to the environment are becoming increasingly well understood. Much less is…”
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Genetic Control of Plant Development by Overriding a Geometric Division Rule by Yoshida, Saiko, Barbier de Reuille, Pierre, Lane, Brendan, Bassel, George W., Prusinkiewicz, Przemyslaw, Smith, Richard S., Weijers, Dolf

“…Formative cell divisions are critical for multicellular patterning. In the early plant embryo, such divisions follow from orienting the division plane. A major…”
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A prion-like protein regulator of seed germination undergoes hydration-dependent phase separation by Dorone, Yanniv, Boeynaems, Steven, Flores, Eduardo, Jin, Benjamin, Hateley, Shannon, Bossi, Flavia, Lazarus, Elena, Pennington, Janice G., Michiels, Emiel, De Decker, Mathias, Vints, Katlijn, Baatsen, Pieter, Bassel, George W., Otegui, Marisa S., Holehouse, Alex S., Exposito-Alonso, Moises, Sukenik, Shahar, Gitler, Aaron D., Rhee, Seung Y.

“…Many organisms evolved strategies to survive desiccation. Plant seeds protect dehydrated embryos from various stressors and can lay dormant for millennia…”
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Ethylene-mediated nitric oxide depletion pre-adapts plants to hypoxia stress by Hartman, Sjon, Liu, Zeguang, van Veen, Hans, Vicente, Jorge, Reinen, Emilie, Martopawiro, Shanice, Zhang, Hongtao, van Dongen, Nienke, Bosman, Femke, Bassel, George W., Visser, Eric J. W., Bailey-Serres, Julia, Theodoulou, Frederica L., Hebelstrup, Kim H., Gibbs, Daniel J., Holdsworth, Michael J., Sasidharan, Rashmi, Voesenek, Laurentius A. C. J.

“…Timely perception of adverse environmental changes is critical for survival. Dynamic changes in gases are important cues for plants to sense environmental…”
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Homeostatic response to hypoxia is regulated by the N-end rule pathway in plants by Gibbs, Daniel J., Lee, Seung Cho, Md Isa, Nurulhikma, Gramuglia, Silvia, Fukao, Takeshi, Bassel, George W., Correia, Cristina Sousa, Corbineau, Françoise, Theodoulou, Frederica L., Bailey-Serres, Julia, Holdsworth, Michael J.

“…How plants sense oxygen shortage Tolerance of plants to flooding is an important factor for food security, particularly in the developing world. When plants…”
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Mechanical constraints imposed by 3D cellular geometry and arrangement modulate growth patterns in the Arabidopsis embryo by Bassel, George W., Stamm, Petra, Mosca, Gabriella, de Reuille, Pierre Barbier, Gibbs, Daniel J., Winter, Robin, Janka, Ales, Holdsworth, Michael J., Smith, Richard S.

“…Morphogenesis occurs in 3D space over time and is guided by coordinated gene expression programs. Here we use postembryonic development in Arabidopsis plants…”
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Arabidopsis PYR/PYL/RCAR Receptors Play a Major Role in Quantitative Regulation of Stomatal Aperture and Transcriptional Response to Abscisic Acid by Gonzalez-Guzman, Miguel, Pizzio, Gaston A., Antoni, Regina, Vera-Sirera, Francisco, Merilo, Ebe, Bassel, George W., Fernández, Maria A., Holdsworth, Michael J., Perez-Amador, Miguel Angel, Kollist, Hannes, Rodriguez, Pedro L.

“…Abscisic acid (ABA) is a key hormone for plant growth, development, and stress adaptation. Perception of ABA through four types of receptors has been reported…”
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Nitric Oxide Sensing in Plants Is Mediated by Proteolytic Control of Group VII ERF Transcription Factors by Gibbs, Daniel J., Md Isa, Nurulhikma, Movahedi, Mahsa, Lozano-Juste, Jorge, Mendiondo, Guillermina M., Berckhan, Sophie, Marín-de la Rosa, Nora, Vicente Conde, Jorge, Sousa Correia, Cristina, Pearce, Simon P., Bassel, George W., Hamali, Bulut, Talloji, Prabhavathi, Tomé, Daniel F.A., Coego, Alberto, Beynon, Jim, Alabadí, David, Bachmair, Andreas, León, José, Gray, Julie E., Theodoulou, Frederica L., Holdsworth, Michael J.

“…Nitric oxide (NO) is an important signaling compound in prokaryotes and eukaryotes. In plants, NO regulates critical developmental transitions and stress…”
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Accurate and versatile 3D segmentation of plant tissues at cellular resolution by Wolny, Adrian, Cerrone, Lorenzo, Vijayan, Athul, Tofanelli, Rachele, Barro, Amaya Vilches, Louveaux, Marion, Wenzl, Christian, Strauss, Sören, Wilson-Sánchez, David, Lymbouridou, Rena, Steigleder, Susanne S, Pape, Constantin, Bailoni, Alberto, Duran-Nebreda, Salva, Bassel, George W, Lohmann, Jan U, Tsiantis, Miltos, Hamprecht, Fred A, Schneitz, Kay, Maizel, Alexis, Kreshuk, Anna

“…Quantitative analysis of plant and animal morphogenesis requires accurate segmentation of individual cells in volumetric images of growing organs. In the last…”
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Co-expression tools for plant biology: opportunities for hypothesis generation and caveats by USADEL, BJÖRN, OBAYASHI, TAKESHI, MUTWIL, MAREK, GIORGI, FEDERICO M, BASSEL, GEORGE W, TANIMOTO, MIMI, CHOW, AMANDA, STEINHAUSER, DIRK, PERSSON, STAFFAN, PROVART, NICHOLAS J

“…Gene co-expression analysis has emerged in the past 5 years as a powerful tool for gene function prediction. In essence, co-expression analysis asks the…”
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A single-cell morpho-transcriptomic map of brassinosteroid action in the Arabidopsis root by Graeff, Moritz, Rana, Surbhi, Wendrich, Jos R, Dorier, Julien, Eekhout, Thomas, Aliaga Fandino, Ana Cecilia, Guex, Nicolas, Bassel, George W, De Rybel, Bert, Hardtke, Christian S

“…The effects of brassinosteroid signaling on shoot and root development have been characterized in great detail but a simple consistent positive or negative…”
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Oxygen Sensing Coordinates Photomorphogenesis to Facilitate Seedling Survival by Abbas, Mohamad, Berckhan, Sophie, Rooney, Daniel J., Gibbs, Daniel J., Vicente Conde, Jorge, Sousa Correia, Cristina, Bassel, George W., Marín-de la Rosa, Nora, León, José, Alabadí, David, Blázquez, Miguel A., Holdsworth, Michael J.

“…Successful emergence from the soil is essential for plant establishment in natural and farmed systems. It has been assumed that the absence of light in the…”
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Genome-wide network model capturing seed germination reveals coordinated regulation of plant cellular phase transitions by Bassel, George W, Lan, Hui, Glaab, Enrico, Gibbs, Daniel J, Gerjets, Tanja, Krasnogor, Natalio, Bonner, Anthony J, Holdsworth, Michael J, Provart, Nicholas J

“…Seed germination is a complex trait of key ecological and agronomic significance. Few genetic factors regulating germination have been identified, and the…”
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Identification of Reference Genes for RT-qPCR Expression Analysis in Arabidopsis and Tomato Seeds by Dekkers, Bas J. W., Willems, Leo, Bassel, George W., van Bolderen-Veldkamp, R. P. (Marieke), Ligterink, Wilco, Hilhorst, Henk W. M., Bentsink, Leónie

“…Quantifying gene expression levels is an important research tool to understand biological systems. Reverse transcription-quantitative real-time PCR (RT-qPCR)…”
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Functional Network Construction in Arabidopsis Using Rule-Based Machine Learning on Large-Scale Data Sets by Bassel, George W., Glaab, Enrico, Marquez, Julietta, Holdsworth, Michael J., Bacardit, Jaume

“…The meta-analysis of large-scale postgenomics data sets within public databases promises to provide important novel biological knowledge. Statistical…”
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The decision to germinate is regulated by divergent molecular networks in spores and seeds by Vesty, Eleanor F., Saidi, Younousse, Moody, Laura A., Holloway, Daniel, Whitbread, Amy, Needs, Sarah, Choudhary, Anushree, Burns, Bethany, McLeod, Daniel, Bradshaw, Susan J., Bae, Hansol, King, Brian Christopher, Bassel, George W., Simonsen, Henrik Toft, Coates, Juliet C.

“…Dispersal is a key step in land plant life cycles, usually via formation of spores or seeds. Regulation of spore- or seed-germination allows control over the…”
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Digital Single-Cell Analysis of Plant Organ Development Using 3DCellAtlas by Montenegro-Johnson, Thomas D., Stamm, Petra, Strauss, Soeren, Topham, Alexander T., Tsagris, Michail, Wood, Andrew T.A., Smith, Richard S., Bassel, George W.

“…Diverse molecular networks underlying plant growth and development are rapidly being uncovered. Integrating these data into the spatial and temporal context of…”
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AtMYB93 is a novel negative regulator of lateral root development in Arabidopsis by Gibbs, Daniel J, Voß, Ute, Harding, Susan A, Fannon, Jessica, Moody, Laura A, Yamada, Erika, Swarup, Kamal, Nibau, Candida, Bassel, George W, Choudhary, Anushree, Lavenus, Julien, Bradshaw, Susan J, Stekel, Dov J, Bennett, Malcolm J, Coates, Juliet C

“…Plant root system plasticity is critical for survival in changing environmental conditions. One important aspect of root architecture is lateral root…”
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Topological analysis of multicellular complexity in the plant hypocotyl by Jackson, Matthew Db, Xu, Hao, Duran-Nebreda, Salva, Stamm, Petra, Bassel, George W

“…Multicellularity arose as a result of adaptive advantages conferred to complex cellular assemblies. The arrangement of cells within organs endows higher-order…”
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Global Topological Order Emerges through Local Mechanical Control of Cell Divisions in the Arabidopsis Shoot Apical Meristem by Jackson, Matthew D B, Duran-Nebreda, Salva, Kierzkowski, Daniel, Strauss, Soeren, Xu, Hao, Landrein, Benoit, Hamant, Olivier, Smith, Richard S, Johnston, Iain G, Bassel, George W

“…The control of cell position and division act in concert to dictate multicellular organization in tissues and organs. How these processes shape global order…”
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