Search Results - "Barton, Michael D."

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    High Microbial Diversity Despite Extremely Low Biomass in a Deep Karst Aquifer by Hershey, Olivia S, Kallmeyer, Jens, Wallace, Andrew, Barton, Michael D, Barton, Hazel A

    Published in Frontiers in microbiology (26-11-2018)
    “…Despite the importance of karst aquifers as a source of drinking water, little is known about the role of microorganisms in maintaining the quality of this…”
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    Journal Article
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    Fe(III) Reducing Microorganisms from Iron Ore Caves Demonstrate Fermentative Fe(III) Reduction and Promote Cave Formation by Parker, Ceth W., Auler, Augusto S., Barton, Michael D., Sasowsky, Ira D., Senko, John M., Barton, Hazel A.

    Published in Geomicrobiology journal (21-04-2018)
    “…The banded iron formations (BIF) of Brazil are composed of silica and Fe(III) oxide lamina, and are largely covered by a rock cap of BIF fragments in a…”
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    Journal Article
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    Evolutionary systems biology of amino acid biosynthetic cost in yeast by Barton, Michael D, Delneri, Daniela, Oliver, Stephen G, Rattray, Magnus, Bergman, Casey M

    Published in PloS one (17-08-2010)
    “…Every protein has a biosynthetic cost to the cell based on the synthesis of its constituent amino acids. In order to optimise growth and reproduction, natural…”
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    Journal Article
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    Genome of Pseudomonas fluorescens Strain R124 Demonstrates Phenotypic Adaptation to the Mineral Environment by Barton, Michael D, Petronio, Michael, Giarrizzo, Juan G, Bowling, Bethany V, Barton, Hazel A

    Published in Journal of Bacteriology (01-11-2013)
    “…Microbial adaptation to environmental conditions is a complex process, including acquisition of positive traits through horizontal gene transfer or the…”
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    Journal Article
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    Genomer--a Swiss army knife for genome scaffolding by Barton, Michael D, Barton, Hazel A

    Published in PloS one (24-06-2013)
    “…The increasing accessibility and reduced costs of sequencing has made genome analysis accessible to more and more researchers. Yet there remains a steep…”
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    Journal Article
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    Critical Assessment of Metagenome Interpretation—a benchmark of metagenomics software by Sczyrba, Alexander, Hofmann, Peter, Belmann, Peter, Koslicki, David, Janssen, Stefan, Dröge, Johannes, Gregor, Ivan, Majda, Stephan, Fiedler, Jessika, Dahms, Eik, Bremges, Andreas, Fritz, Adrian, Garrido-Oter, Ruben, Jørgensen, Tue Sparholt, Shapiro, Nicole, Blood, Philip D, Gurevich, Alexey, Bai, Yang, Turaev, Dmitrij, DeMaere, Matthew Z, Chikhi, Rayan, Nagarajan, Niranjan, Quince, Christopher, Meyer, Fernando, Balvočiūtė, Monika, Hansen, Lars Hestbjerg, Sørensen, Søren J, Chia, Burton K H, Denis, Bertrand, Froula, Jeff L, Wang, Zhong, Egan, Robert, Don Kang, Dongwan, Cook, Jeffrey J, Deltel, Charles, Beckstette, Michael, Lemaitre, Claire, Peterlongo, Pierre, Rizk, Guillaume, Lavenier, Dominique, Wu, Yu-Wei, Singer, Steven W, Jain, Chirag, Strous, Marc, Klingenberg, Heiner, Meinicke, Peter, Barton, Michael D, Lingner, Thomas, Lin, Hsin-Hung, Liao, Yu-Chieh, Silva, Genivaldo Gueiros Z, Cuevas, Daniel A, Edwards, Robert A, Saha, Surya, Piro, Vitor C, Renard, Bernhard Y, Pop, Mihai, Klenk, Hans-Peter, Göker, Markus, Kyrpides, Nikos C, Woyke, Tanja, Vorholt, Julia A, Schulze-Lefert, Paul, Rubin, Edward M, Darling, Aaron E, Rattei, Thomas, McHardy, Alice C

    Published in Nature methods (01-11-2017)
    “…The Critical Assessment of Metagenome Interpretation (CAMI) community initiative presents results from its first challenge, a rigorous benchmarking of software…”
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    Journal Article
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    Bioboxes: standardised containers for interchangeable bioinformatics software by Belmann, Peter, Dröge, Johannes, Bremges, Andreas, McHardy, Alice C, Sczyrba, Alexander, Barton, Michael D

    Published in Gigascience (15-10-2015)
    “…Software is now both central and essential to modern biology, yet lack of availability, difficult installations, and complex user interfaces make software hard…”
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    Journal Article
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    Measurement of the anisotropic thermal conductivity of the porcine cornea by Barton, Michael D., Trembly, B. Stuart

    Published in Experimental eye research (01-10-2013)
    “…Accurate thermal models for the cornea of the eye support the development of thermal techniques for reshaping the cornea and other scientific purposes. Heat…”
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    Journal Article
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    Scaffolder - software for manual genome scaffolding by Barton, Michael D, Barton, Hazel A

    Published in Source code for biology and medicine (28-05-2012)
    “…The assembly of next-generation short-read sequencing data can result in a fragmented non-contiguous set of genomic sequences. Therefore a common step in a…”
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    Journal Article
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    Modified GFAP promoter auto-regulates tet-activator expression for increased transactivation and reduced tTA-associated toxicity by Barton, Michael D., Dunlop, J.W., Psaltis, G., Kulik, J., DeGennaro, L., Kwak, Seung P.

    Published in Brain research. Molecular brain research. (30-05-2002)
    “…Transactivator tTA is a necessary component of the tetracycline-regulated inducible gene system. While several transgenic animals have been described that…”
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    Journal Article
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    Genomer - A Swiss Army Knife for Genome Scaffolding. e66922 by Barton, Michael D, Barton, Hazel A

    Published in PloS one (01-06-2013)
    “…The increasing accessibility and reduced costs of sequencing has made genome analysis accessible to more and more researchers. Yet there remains a steep…”
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    Journal Article
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    Evolutionary systems biology of amino acid biosynthetic cost and gene importance in saccharomyces cerevisiae by Barton, Michael D

    Published 01-01-2009
    “…The aim of this PhD has been to use a model of Saccharomyces cerevisiae metabolism to make predictions about gene function and evolution. These predictions…”
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    Dissertation
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    A Qualitative Exploration of Sacred Moments in Radiation Oncology by Saint, Kirin, Ehrlinger, Rachel, Gilliland, Jaime, Barton, Michael F., Xu, Amy J., Santos, Patricia Mae G., Yerramilli, Divya

    Published in Advances in radiation oncology (01-11-2024)
    “…While there are many benefits to radiation oncology services, there can be emotional burdens in the care of patients with advanced cancer. Burnout is a…”
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    Journal Article
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