Search Results - "Barton, Carl"

Linear-time computation of minimal absent words using suffix array by Barton, Carl, Heliou, Alice, Mouchard, Laurent, Pissis, Solon P

“…An absent word of a word y of length n is a word that does not occur in y. It is a minimal absent word if all its proper factors occur in y. Minimal absent…”
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Ageing-associated DNA methylation dynamics are a molecular readout of lifespan variation among mammalian species by Lowe, Robert, Barton, Carl, Jenkins, Christopher A, Ernst, Christina, Forman, Oliver, Fernandez-Twinn, Denise S, Bock, Christoph, Rossiter, Stephen J, Faulkes, Chris G, Ozanne, Susan E, Walter, Lutz, Odom, Duncan T, Mellersh, Cathryn, Rakyan, Vardhman K

“…Mammalian species exhibit a wide range of lifespans. To date, a robust and dynamic molecular readout of these lifespan differences has not yet been identified…”
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Spike protein mutations and structural insights of pangolin lineage B.1.1.25 with implications for viral pathogenicity and ACE2 binding affinity by Akter, Shahina, Oliveira, Jonas Ivan Nobre, Barton, Carl, Sarkar, Murshed Hasan, Shahab, Muhammad, Banu, Tanjina Akhtar, Goswami, Barna, Osman, Eshrar, Uzzaman, Mohammad Samir, Nafisa, Tasnim, Molla, Maruf Ahmed, Yeasmin, Mahmuda, Farzana, Maisha, Habib, Ahashan, Shaikh, Aftab Ali, Khan, Salim

“…Severe Acute Respiratory Syndrome Coronavirus 2 (SARS-CoV-2), the causative agent of COVID -19, is constantly evolving, requiring continuous genomic…”
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The Medaka Inbred Kiyosu-Karlsruhe (MIKK) panel by Fitzgerald, Tomas, Brettell, Ian, Leger, Adrien, Wolf, Nadeshda, Kusminski, Natalja, Monahan, Jack, Barton, Carl, Herder, Cathrin, Aadepu, Narendar, Gierten, Jakob, Becker, Clara, Hammouda, Omar T, Hasel, Eva, Lischik, Colin, Lust, Katharina, Sokolova, Natalia, Suzuki, Risa, Tsingos, Erika, Tavhelidse, Tinatini, Thumberger, Thomas, Watson, Philip, Welz, Bettina, Khouja, Nadia, Naruse, Kiyoshi, Birney, Ewan, Wittbrodt, Joachim, Loosli, Felix

“…Unraveling the relationship between genetic variation and phenotypic traits remains a fundamental challenge in biology. Mapping variants underlying complex…”
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Genomic variations and epigenomic landscape of the Medaka Inbred Kiyosu-Karlsruhe (MIKK) panel by Leger, Adrien, Brettell, Ian, Monahan, Jack, Barton, Carl, Wolf, Nadeshda, Kusminski, Natalja, Herder, Cathrin, Aadepu, Narendar, Becker, Clara, Gierten, Jakob, Hammouda, Omar T, Hasel, Eva, Lischik, Colin, Lust, Katharina, Sokolova, Natalia, Suzuki, Risa, Tavhelidse, Tinatini, Thumberger, Thomas, Tsingos, Erika, Watson, Philip, Welz, Bettina, Naruse, Kiyoshi, Loosli, Felix, Wittbrodt, Joachim, Birney, Ewan, Fitzgerald, Tomas

“…The teleost medaka (Oryzias latipes) is a well-established vertebrate model system, with a long history of genetic research, and multiple high-quality…”
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ChromoTrace: Computational reconstruction of 3D chromosome configurations for super-resolution microscopy by Barton, Carl, Morganella, Sandro, Ødegård-Fougner, Øyvind, Alexander, Stephanie, Ries, Jonas, Fitzgerald, Tomas, Ellenberg, Jan, Birney, Ewan

“…The 3D structure of chromatin plays a key role in genome function, including gene expression, DNA replication, chromosome segregation, and DNA repair…”
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Whole genome mapping and identification of single nucleotide polymorphisms of four Bangladeshi individuals and their functional significance by Khan, Salim, Akter, Shahina, Goswami, Barna, Habib, Ahashan, Banu, Tanjina Akhtar, Barton, Carl, Osman, Eshrar, Samir, Samiruzzaman, Arjuman, Farida, Hasan, Saam, Hossain, Maqsud

“…The major objective of the study was to sequence the whole genome of four Bangladeshi individuals and identify variants that are known to be associated with…”
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Fast algorithms for approximate circular string matching by Barton, Carl, Iliopoulos, Costas S, Pissis, Solon P

“…Circular string matching is a problem which naturally arises in many biological contexts. It consists in finding all occurrences of the rotations of a pattern…”
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On the average-case complexity of pattern matching with wildcards by Barton, Carl

“…Pattern matching with wildcards is a string matching problem with the goal of finding all factors of a text t of length n that match a pattern x of length m,…”
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INTRAVASCULAR DIFFUSE B-CELL LYMPHOMA OF THE THORACIC AORTA MIMICKING AN INTRAMURAL HEMATOMA by Jean-Marie, Elizabeth, Gillombardo, Carl Barton

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A CASE OF IGG4-RELATED AORTITIS PRESENTING AS ABDOMINAL PAIN by Jean-Marie, Elizabeth, Gillombardo, Carl Barton

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Editorial: The 27th London Stringology Days & London Algorithmic Workshop (LSD & LAW) 2019 by Ayad, Lorraine A.K., Barton, Carl, Iliopoulos, Costas

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PARAGANGLIOMA-INDUCED REVERSE TAKOTSUBO CARDIOMYOPATHY TREATED WITH EXTRACORPOREAL MEMBRANE OXYGENATION IN A PATIENT WITH PRIMARY OVARIAN INSUFFICIENCY: A CASE REPORT by Ajluni, Steven, Jean-Marie, Elizabeth, Feroze, Rafey, Gillombardo, Carl Barton, Sundaram, Varun

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Linear-time computation of prefix table for weighted strings & applications by Barton, Carl, Liu, Chang, Pissis, Solon P.

“…The prefix table of a string is one of the most fundamental data structures of algorithms on strings: it determines the longest factor at each position of the…”
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Crochemore’s Partitioning on Weighted Strings and Applications by Barton, Carl, Pissis, Solon P.

“…Given a string on alphabet Σ the partitioning problem is to compute classes of equivalences on the set of positions of the input string. These classes…”
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A faster and more accurate heuristic for cyclic edit distance computation by Ayad, Lorraine A.K., Barton, Carl, Pissis, Solon P.

“…•This letter describes a new heuristic algorithm to compute the cyclic edit distance.•We extend an existing algorithm which compares circular sequences using…”
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A community effort to optimize sequence-based deep learning models of gene regulation by Rafi, Abdul Muntakim, Nogina, Daria, Penzar, Dmitry, Lee, Dohoon, Lee, Danyeong, Kim, Nayeon, Kim, Sangyeup, Kim, Dohyeon, Shin, Yeojin, Kwak, Il-Youp, Meshcheryakov, Georgy, Lando, Andrey, Zinkevich, Arsenii, Kim, Byeong-Chan, Lee, Juhyun, Kang, Taein, Vaishnav, Eeshit Dhaval, Yadollahpour, Payman, Kim, Sun, Albrecht, Jake, Regev, Aviv, Gong, Wuming, Kulakovskiy, Ivan V, Meyer, Pablo, de Boer, Carl G

“…A systematic evaluation of how model architectures and training strategies impact genomics model performance is needed. To address this gap, we held a DREAM…”
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Transcriptome activity of isochores during preimplantation process in human and mouse by Barton, Carl, Iliopoulos, Costas S., Pissis, Solon P., Arhondakis, Stilianos

“…This work investigates the role of isochores during preimplantation process. Using RNA‐seq data from human and mouse preimplantation stages, we created the…”
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Global and local sequence alignment with a bounded number of gaps by Barton, Carl, Flouri, Tomáš, Iliopoulos, Costas S., Pissis, Solon P.

“…Pairwise sequence alignment techniques have gained renewed interest in recent years, primarily due to their applications in re-sequencing—the assembly of a…”
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Spinal extradural benign synovial or ganglion cyst: case report and review of the literature by Pendleton, B, Carl, B, Pollay, M

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