Search Results - "Barba, Matthieu"

Matching curated genome databases: a non trivial task by Descorps-Declère, Stéphane, Barba, Matthieu, Labedan, Bernard

“…Curated databases of completely sequenced genomes have been designed independently at the NCBI (RefSeq) and EBI (Genome Reviews) to cope with non-standard…”
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VEuPathDB: the eukaryotic pathogen, vector and host bioinformatics resource center by Amos, Beatrice, Aurrecoechea, Cristina, Barba, Matthieu, Barreto, Ana, Basenko, Evelina Y, Bażant, Wojciech, Belnap, Robert, Blevins, Ann S, Böhme, Ulrike, Brestelli, John, Brunk, Brian P, Caddick, Mark, Callan, Danielle, Campbell, Lahcen, Christensen, Mikkel B, Christophides, George K, Crouch, Kathryn, Davis, Kristina, DeBarry, Jeremy, Doherty, Ryan, Duan, Yikun, Dunn, Michael, Falke, Dave, Fisher, Steve, Flicek, Paul, Fox, Brett, Gajria, Bindu, Giraldo-Calderón, Gloria I, Harb, Omar S, Harper, Elizabeth, Hertz-Fowler, Christiane, Hickman, Mark J, Howington, Connor, Hu, Sufen, Humphrey, Jay, Iodice, John, Jones, Andrew, Judkins, John, Kelly, Sarah A, Kissinger, Jessica C, Kwon, Dae Kun, Lamoureux, Kristopher, Lawson, Daniel, Li, Wei, Lies, Kallie, Lodha, Disha, Long, Jamie, MacCallum, Robert M, Maslen, Gareth, McDowell, Mary Ann, Nabrzyski, Jaroslaw, Roos, David S, Rund, Samuel S C, Schulman, Stephanie Wever, Shanmugasundram, Achchuthan, Sitnik, Vasily, Spruill, Drew, Starns, David, Stoeckert, Christian J, Tomko, Sheena Shah, Wang, Haiming, Warrenfeltz, Susanne, Wieck, Robert, Wilkinson, Paul A, Xu, Lin, Zheng, Jie

“…Abstract The Eukaryotic Pathogen, Vector and Host Informatics Resource (VEuPathDB, https://veupathdb.org) represents the 2019 merger of VectorBase with the…”
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Ensembl Genomes 2022: an expanding genome resource for non-vertebrates by Yates, Andrew D, Allen, James, Amode, Ridwan M, Azov, Andrey G, Barba, Matthieu, Becerra, Andrés, Bhai, Jyothish, Campbell, Lahcen I, Carbajo Martinez, Manuel, Chakiachvili, Marc, Chougule, Kapeel, Christensen, Mikkel, Contreras-Moreira, Bruno, Cuzick, Alayne, Da Rin Fioretto, Luca, Davis, Paul, De Silva, Nishadi H, Diamantakis, Stavros, Dyer, Sarah, Elser, Justin, Filippi, Carla V, Gall, Astrid, Grigoriadis, Dionysios, Guijarro-Clarke, Cristina, Gupta, Parul, Hammond-Kosack, Kim E, Howe, Kevin L, Jaiswal, Pankaj, Kaikala, Vinay, Kumar, Vivek, Kumari, Sunita, Langridge, Nick, Le, Tuan, Luypaert, Manuel, Maslen, Gareth L, Maurel, Thomas, Moore, Benjamin, Muffato, Matthieu, Mushtaq, Aleena, Naamati, Guy, Naithani, Sushma, Olson, Andrew, Parker, Anne, Paulini, Michael, Pedro, Helder, Perry, Emily, Preece, Justin, Quinton-Tulloch, Mark, Rodgers, Faye, Rosello, Marc, Ruffier, Magali, Seager, James, Sitnik, Vasily, Szpak, Michal, Tate, John, Tello-Ruiz, Marcela K, Trevanion, Stephen J, Urban, Martin, Ware, Doreen, Wei, Sharon, Williams, Gary, Winterbottom, Andrea, Zarowiecki, Magdalena, Finn, Robert D, Flicek, Paul

“…Abstract Ensembl Genomes (https://www.ensemblgenomes.org) provides access to non-vertebrate genomes and analysis complementing vertebrate resources developed…”
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Ensembl Genomes 2020—enabling non-vertebrate genomic research by Howe, Kevin L, Contreras-Moreira, Bruno, De Silva, Nishadi, Maslen, Gareth, Akanni, Wasiu, Allen, James, Alvarez-Jarreta, Jorge, Barba, Matthieu, Bolser, Dan M, Cambell, Lahcen, Carbajo, Manuel, Chakiachvili, Marc, Christensen, Mikkel, Cummins, Carla, Cuzick, Alayne, Davis, Paul, Fexova, Silvie, Gall, Astrid, George, Nancy, Gil, Laurent, Gupta, Parul, Hammond-Kosack, Kim E, Haskell, Erin, Hunt, Sarah E, Jaiswal, Pankaj, Janacek, Sophie H, Kersey, Paul J, Langridge, Nick, Maheswari, Uma, Maurel, Thomas, McDowall, Mark D, Moore, Ben, Muffato, Matthieu, Naamati, Guy, Naithani, Sushma, Olson, Andrew, Papatheodorou, Irene, Patricio, Mateus, Paulini, Michael, Pedro, Helder, Perry, Emily, Preece, Justin, Rosello, Marc, Russell, Matthew, Sitnik, Vasily, Staines, Daniel M, Stein, Joshua, Tello-Ruiz, Marcela K, Trevanion, Stephen J, Urban, Martin, Wei, Sharon, Ware, Doreen, Williams, Gary, Yates, Andrew D, Flicek, Paul

“…Abstract Ensembl Genomes (http://www.ensemblgenomes.org) is an integrating resource for genome-scale data from non-vertebrate species, complementing the…”
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Ensembl Genomes 2018: an integrated omics infrastructure for non-vertebrate species by Kersey, Paul Julian, Allen, James E, Allot, Alexis, Barba, Matthieu, Boddu, Sanjay, Bolt, Bruce J, Carvalho-Silva, Denise, Christensen, Mikkel, Davis, Paul, Grabmueller, Christoph, Kumar, Navin, Liu, Zicheng, Maurel, Thomas, Moore, Ben, McDowall, Mark D, Maheswari, Uma, Naamati, Guy, Newman, Victoria, Ong, Chuang Kee, Paulini, Michael, Pedro, Helder, Perry, Emily, Russell, Matthew, Sparrow, Helen, Tapanari, Electra, Taylor, Kieron, Vullo, Alessandro, Williams, Gareth, Zadissia, Amonida, Olson, Andrew, Stein, Joshua, Wei, Sharon, Tello-Ruiz, Marcela, Ware, Doreen, Luciani, Aurelien, Potter, Simon, Finn, Robert D, Urban, Martin, Hammond-Kosack, Kim E, Bolser, Dan M, De Silva, Nishadi, Howe, Kevin L, Langridge, Nicholas, Maslen, Gareth, Staines, Daniel Michael, Yates, Andrew

“…Abstract Ensembl Genomes (http://www.ensemblgenomes.org) is an integrating resource for genome-scale data from non-vertebrate species, complementing the…”
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Ensembl 2024 by Harrison, Peter W, Amode, M Ridwan, Austine-Orimoloye, Olanrewaju, Azov, Andrey G, Barba, Matthieu, Barnes, If, Becker, Arne, Bennett, Ruth, Berry, Andrew, Bhai, Jyothish, Bhurji, Simarpreet Kaur, Boddu, Sanjay, Branco Lins, Paulo R, Brooks, Lucy, Ramaraju, Shashank Budhanuru, Campbell, Lahcen I, Martinez, Manuel Carbajo, Charkhchi, Mehrnaz, Chougule, Kapeel, Cockburn, Alexander, Davidson, Claire, De Silva, Nishadi H, Dodiya, Kamalkumar, Donaldson, Sarah, El Houdaigui, Bilal, Naboulsi, Tamara El, Fatima, Reham, Giron, Carlos Garcia, Genez, Thiago, Grigoriadis, Dionysios, Ghattaoraya, Gurpreet S, Martinez, Jose Gonzalez, Gurbich, Tatiana A, Hardy, Matthew, Hollis, Zoe, Hourlier, Thibaut, Hunt, Toby, Kay, Mike, Kaykala, Vinay, Le, Tuan, Lemos, Diana, Lodha, Disha, Marques-Coelho, Diego, Maslen, Gareth, Merino, Gabriela Alejandra, Mirabueno, Louisse Paola, Mushtaq, Aleena, Hossain, Syed Nakib, Ogeh, Denye N, Sakthivel, Manoj Pandian, Parker, Anne, Perry, Malcolm, Piližota, Ivana, Poppleton, Daniel, Prosovetskaia, Irina, Raj, Shriya, Pérez-Silva, José G, Salam, Ahamed Imran Abdul, Saraf, Shradha, Saraiva-Agostinho, Nuno, Sheppard, Dan, Sinha, Swati, Sipos, Botond, Sitnik, Vasily, Stark, William, Steed, Emily, Suner, Marie-Marthe, Surapaneni, Likhitha, Sutinen, Kyösti, Tricomi, Francesca Floriana, Urbina-Gómez, David, Veidenberg, Andres, Walsh, Thomas A, Ware, Doreen, Wass, Elizabeth, Willhoft, Natalie L, Allen, Jamie, Alvarez-Jarreta, Jorge, Chakiachvili, Marc, Flint, Bethany, Giorgetti, Stefano, Haggerty, Leanne, Ilsley, Garth R, Keatley, Jon, Loveland, Jane E, Moore, Benjamin, Mudge, Jonathan M, Naamati, Guy, Tate, John, Trevanion, Stephen J, Winterbottom, Andrea, Frankish, Adam, Hunt, Sarah E, Cunningham, Fiona, Dyer, Sarah, Finn, Robert D, Martin, Fergal J, Yates, Andrew D

“…Abstract Ensembl (https://www.ensembl.org) is a freely available genomic resource that has produced high-quality annotations, tools, and services for…”
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VEuPathDB: the eukaryotic pathogen, vector and host bioinformatics resource center in 2023 by Alvarez-Jarreta, Jorge, Amos, Beatrice, Aurrecoechea, Cristina, Bah, Saikou, Barba, Matthieu, Barreto, Ana, Basenko, Evelina Y, Belnap, Robert, Blevins, Ann, Böhme, Ulrike, Brestelli, John, Brown, Stuart, Callan, Danielle, Campbell, Lahcen I, Christophides, George K, Crouch, Kathryn, Davison, Helen R, DeBarry, Jeremy D, Demko, Richard, Doherty, Ryan, Duan, Yikun, Dundore, Walter, Dyer, Sarah, Falke, Dave, Fischer, Steve, Gajria, Bindu, Galdi, Daniel, Giraldo-Calderón, Gloria I, Harb, Omar S, Harper, Elizabeth, Helb, Danica, Howington, Connor, Hu, Sufen, Humphrey, Jay, Iodice, John, Jones, Andrew, Judkins, John, Kelly, Sarah A, Kissinger, Jessica C, Kittur, Nupur, Kwon, Dae Kun, Lamoureux, Kristopher, Li, Wei, Lodha, Disha, MacCallum, Robert M, Maslen, Gareth, McDowell, Mary Ann, Myers, Jeremy, Nural, Mustafa Veysi, Roos, David S, Rund, Samuel S C, Shanmugasundram, Achchuthan, Sitnik, Vasily, Spruill, Drew, Starns, David, Tomko, Sheena Shah, Wang, Haiming, Warrenfeltz, Susanne, Wieck, Robert, Wilkinson, Paul A, Zheng, Jie

“…Abstract The Eukaryotic Pathogen, Vector and Host Informatics Resource (VEuPathDB, https://veupathdb.org) is a Bioinformatics Resource Center funded by the…”
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Evolution of Cyclic Amidohydrolases: A Highly Diversified Superfamily by Barba, Matthieu, Glansdorff, Nicolas, Labedan, Bernard

“…Dihydroorotases are universal proteins catalyzing the third step of pyrimidine biosynthesis. These zinc metalloenzymes belong to the superfamily of cyclic…”
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Synteruptor: mining genomic islands for non-classical specialized metabolite gene clusters by Haas, Drago, Barba, Matthieu, Vicente, Cláudia M, Nezbedová, Šarká, Garénaux, Amélie, Bury-Moné, Stéphanie, Lorenzi, Jean-Noël, Hôtel, Laurence, Laureti, Luisa, Thibessard, Annabelle, Le Goff, Géraldine, Ouazzani, Jamal, Leblond, Pierre, Aigle, Bertrand, Pernodet, Jean-Luc, Lespinet, Olivier, Lautru, Sylvie

“…Abstract Microbial specialized metabolite biosynthetic gene clusters (SMBGCs) are a formidable source of natural products of pharmaceutical interest. With the…”
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Identifying reaction modules in metabolic pathways: bioinformatic deduction and experimental validation of a new putative route in purine catabolism by Barba, Matthieu, Dutoit, Raphaël, Legrain, Christianne, Labedan, Bernard

“…Enzymes belonging to mechanistically diverse superfamilies often display similar catalytic mechanisms. We previously observed such an association in the case…”
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