Search Results - "Baras, S."

Modeling the Role of the Glymphatic Pathway and Cerebral Blood Vessel Properties in Alzheimer's Disease Pathogenesis by Kyrtsos, Christina Rose, Baras, John S

“…Alzheimer's disease (AD) is the most common cause of dementia in the elderly, affecting over 10% population over the age of 65 years. Clinically, AD is…”
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Value of Information in Feedback Control: Quantification by Soleymani, Touraj, Baras, John S., Hirche, Sandra

“…Although transmission of a data packet containing sensory information in a networked control system improves the quality of regulation, it has indeed a price…”
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DeepTCR is a deep learning framework for revealing sequence concepts within T-cell repertoires by Sidhom, John-William, Larman, H. Benjamin, Pardoll, Drew M., Baras, Alexander S.

“…Deep learning algorithms have been utilized to achieve enhanced performance in pattern-recognition tasks. The ability to learn complex patterns in data has…”
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Value of Information in Feedback Control: Global Optimality by Soleymani, Touraj, Baras, John S., Hirche, Sandra, Johansson, Karl H.

“…The rate-regulation tradeoff, defined between two objective functions, one penalizing the packet rate and one the regulation cost, can express the fundamental…”
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Implications of the tumor immune microenvironment for staging and therapeutics by Taube, Janis M, Galon, Jérôme, Sholl, Lynette M, Rodig, Scott J, Cottrell, Tricia R, Giraldo, Nicolas A, Baras, Alexander S, Patel, Sanjay S, Anders, Robert A, Rimm, David L, Cimino-Mathews, Ashley

“…Characterizing the tumor immune microenvironment enables the identification of new prognostic and predictive biomarkers, the development of novel therapeutic…”
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miRge 2.0 for comprehensive analysis of microRNA sequencing data by Lu, Yin, Baras, Alexander S, Halushka, Marc K

“…miRNAs play important roles in the regulation of gene expression. The rapidly developing field of microRNA sequencing (miRNA-seq; small RNA-seq) needs…”
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A critical evaluation of microRNA biomarkers in non-neoplastic disease by Haider, Baqer A, Baras, Alexander S, McCall, Matthew N, Hertel, Joshua A, Cornish, Toby C, Halushka, Marc K

“…MicroRNAs (miRNAs) are small (∼22-nt), stable RNAs that critically modulate post-transcriptional gene regulation. MicroRNAs can be found in the blood as…”
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The Evolution of Beliefs over Signed Social Networks by Shi, Guodong, Proutiere, Alexandre, Johansson, Mikael, Baras, John S., Johansson, Karl H.

“…We study the evolution of opinions (or beliefs) over a social network modeled as a signed graph. The sign attached to an edge in this graph characterizes…”
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Modeling and control of hysteresis in magnetostrictive actuators by Tan, Xiaobo, Baras, John S.

“…A novel dynamic model is proposed for the hysteresis in magnetostrictive actuators by coupling a Preisach operator to an ordinary differential equation, and a…”
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Deep learning identifies antigenic determinants of severe SARS-CoV-2 infection within T-cell repertoires by Sidhom, John-William, Baras, Alexander S.

“…SARS-CoV-2 infection is characterized by a highly variable clinical course with patients experiencing asymptomatic infection all the way to requiring critical…”
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Re-engineered BCG overexpressing cyclic di-AMP augments trained immunity and exhibits improved efficacy against bladder cancer by Singh, Alok Kumar, Praharaj, Monali, Lombardo, Kara A., Yoshida, Takahiro, Matoso, Andres, Baras, Alex S., Zhao, Liang, Srikrishna, Geetha, Huang, Joy, Prasad, Pankaj, Powell, Jonathan D., Kates, Max, McConkey, David, Pardoll, Drew M., Bishai, William R., Bivalacqua, Trinity J.

“…In addition to its role as a TB vaccine, BCG has been shown to elicit heterologous protection against many other pathogens including viruses through a process…”
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Toward the human cellular microRNAome by McCall, Matthew N, Kim, Min-Sik, Adil, Mohammed, Patil, Arun H, Lu, Yin, Mitchell, Christopher J, Leal-Rojas, Pamela, Xu, Jinchong, Kumar, Manoj, Dawson, Valina L, Dawson, Ted M, Baras, Alexander S, Rosenberg, Avi Z, Arking, Dan E, Burns, Kathleen H, Pandey, Akhilesh, Halushka, Marc K

“…MicroRNAs are short RNAs that serve as regulators of gene expression and are essential components of normal development as well as modulators of disease…”
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Feedback Control Over Noisy Channels: Characterization of a General Equilibrium by Soleymani, Touraj, Baras, John S., Hirche, Sandra, Johansson, Karl H.

“…In this article, we study an energy-regulation tradeoff that delineates the fundamental performance bound of a feedback control system over a noisy channel in…”
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Association between pathologic response and survival after neoadjuvant therapy in lung cancer by Deutsch, Julie Stein, Cimino-Mathews, Ashley, Thompson, Elizabeth, Provencio, Mariano, Forde, Patrick M., Spicer, Jonathan, Girard, Nicolas, Wang, Daphne, Anders, Robert A., Gabrielson, Edward, Illei, Peter, Jedrych, Jaroslaw, Danilova, Ludmila, Sunshine, Joel, Kerr, Keith M., Tran, Mia, Bushong, Judith, Cai, Junliang, Devas, Vipul, Neely, Jaclyn, Balli, David, Cottrell, Tricia R., Baras, Alex S., Taube, Janis M.

“…Neoadjuvant immunotherapy plus chemotherapy improves event-free survival (EFS) and pathologic complete response (0% residual viable tumor (RVT) in primary…”
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Prevalence of DNA repair gene mutations in localized prostate cancer according to clinical and pathologic features: association of Gleason score and tumor stage by Marshall, Catherine Handy, Fu, Wei, Wang, Hao, Baras, Alexander S., Lotan, Tamara L., Antonarakis, Emmanuel S.

“…Background DNA repair gene mutations are present in 8–10% of localized prostate cancers. It is unknown whether this is influenced by clinicopathologic factors…”
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Adaptive identification and control of hysteresis in smart materials by Xiaobo Tan, Baras, J.S.

“…Hysteresis hinders the effective use of smart materials in sensors and actuators. This paper addresses recursive identification and adaptive inverse control of…”
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miRge - A Multiplexed Method of Processing Small RNA-Seq Data to Determine MicroRNA Entropy by Baras, Alexander S, Mitchell, Christopher J, Myers, Jason R, Gupta, Simone, Weng, Lien-Chun, Ashton, John M, Cornish, Toby C, Pandey, Akhilesh, Halushka, Marc K

“…Small RNA RNA-seq for microRNAs (miRNAs) is a rapidly developing field where opportunities still exist to create better bioinformatics tools to process these…”
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AASA: A Priori Adaptive Splitting Algorithm for the Split Delivery Vehicle Routing Problem by Torkzaban, Nariman, Gholami, Anousheh, Baras, John S., Golden, Bruce L.

“…The split delivery vehicle routing problem (SDVRP) is a relaxed variant of the capacitated vehicle routing problem (CVRP) where the restriction that each…”
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Predictive models of response to neoadjuvant chemotherapy in muscle-invasive bladder cancer using nuclear morphology and tissue architecture by Mi, Haoyang, Bivalacqua, Trinity J., Kates, Max, Seiler, Roland, Black, Peter C., Popel, Aleksander S., Baras, Alexander S.

“…Characterizing likelihood of response to neoadjuvant chemotherapy (NAC) in muscle-invasive bladder cancer (MIBC) is an important yet unmet challenge. In this…”
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The Effect of Limited (Tertiary) Gleason Pattern 5 on the New Prostate Cancer Grade Groups by Baras, Alexander S, Nelson, Joel B, Han, Misop, Parwani, Anil V, Epstein, Jonathan I

“…The risk of recurrence for prostatic adenocarcinoma following prostatectomy, as detected by prostate specific antigen (PSA) or other modalities, is based…”
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