Search Results - "Barad, Omer"

Biological Solution to a Fundamental Distributed Computing Problem by Afek, Yehuda, Alon, Noga, Barad, Omer, Hornstein, Eran, Barkai, Naama, Bar-Joseph, Ziv

“…Computational and biological systems are often distributed so that processors (cells) jointly solve a task, without any of them receiving all inputs or…”
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High-resolution genetic mapping of maize pan-genome sequence anchors by Lu, Fei, Romay, Maria C., Glaubitz, Jeffrey C., Bradbury, Peter J., Elshire, Robert J., Wang, Tianyu, Li, Yu, Li, Yongxiang, Semagn, Kassa, Zhang, Xuecai, Hernandez, Alvaro G., Mikel, Mark A., Soifer, Ilya, Barad, Omer, Buckler, Edward S.

“…In addition to single-nucleotide polymorphisms, structural variation is abundant in many plant genomes. The structural variation across a species can be…”
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miRNA-based mechanism for the commitment of multipotent progenitors to a single cellular fate by Mann, Mati, Barad, Omer, Agami, Reuven, Geiger, Benjamin, Hornstein, Eran, Fuchs, Elaine

“…When stem cells and multipotent progenitors differentiate, they undergo fate restriction, enabling a single fate and blocking differentiation along alternative…”
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Identification of hundreds of conserved and nonconserved human microRNAs by Bentwich, Isaac, Avniel, Amir, Karov, Yael, Aharonov, Ranit, Gilad, Shlomit, Barad, Omer, Barzilai, Adi, Einat, Paz, Einav, Uri, Meiri, Eti, Sharon, Eilon, Spector, Yael, Bentwich, Zvi

“…MicroRNAs are noncoding RNAs of ∼22 nucleotides that suppress translation of target genes by binding to their mRNA and thus have a central role in gene…”
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Sex-dependent dominance maintains migration supergene in rainbow trout by Pearse, Devon E., Barson, Nicola J., Nome, Torfinn, Gao, Guangtu, Campbell, Matthew A., Abadía-Cardoso, Alicia, Anderson, Eric C., Rundio, David E., Williams, Thomas H., Naish, Kerry A., Moen, Thomas, Liu, Sixin, Kent, Matthew, Moser, Michel, Minkley, David R., Rondeau, Eric B., Brieuc, Marine S. O., Sandve, Simen Rød, Miller, Michael R., Cedillo, Lucydalila, Baruch, Kobi, Hernandez, Alvaro G., Ben-Zvi, Gil, Shem-Tov, Doron, Barad, Omer, Kuzishchin, Kirill, Garza, John Carlos, Lindley, Steven T., Koop, Ben F., Thorgaard, Gary H., Palti, Yniv, Lien, Sigbjørn

“…Males and females often differ in their fitness optima for shared traits that have a shared genetic basis, leading to sexual conflict. Morphologically…”
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Error minimization in lateral inhibition circuits by Barad, Omer, Rosin, Dalia, Hornstein, Eran, Barkai, Naama

“…The pattern of the sensory bristles in the fruit fly Drosophila is remarkably reproducible. Each bristle arises from a sensory organ precursor (SOP) cell that…”
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The Colorectal MicroRNAome by Cummins, Jordan M., He, Yiping, Leary, Rebecca J., Pagliarini, Ray, Diaz, Luis A., Sjoblom, Tobias, Barad, Omer, Bentwich, Zvi, Szafranska, Anna E., Labourier, Emmanuel, Raymond, Christopher K., Roberts, Brian S., Juhl, Hartmut, Kinzler, Kenneth W., Vogelstein, Bert, Velculescu, Victor E.

“…MicroRNAs (miRNAs) are a class of small noncoding RNAs that have important regulatory roles in multicellular organisms. The public miRNA database contains 321…”
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Robust selection of sensory organ precursors by the Notch–Delta pathway by Barad, Omer, Hornstein, Eran, Barkai, Naama

“…The patterning of multicellular organisms is robust to environmental, genetic, or stochastic fluctuations. Mathematical modeling is instrumental in identifying…”
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MicroRNA expression detected by oligonucleotide microarrays: system establishment and expression profiling in human tissues by Barad, Omer, Meiri, Eti, Avniel, Amir, Aharonov, Ranit, Barzilai, Adi, Bentwich, Isaac, Einav, Uri, Gilad, Shlomit, Hurban, Patrick, Karov, Yael, Lobenhofer, Edward K, Sharon, Eilon, Shiboleth, Yoel M, Shtutman, Marat, Bentwich, Zvi, Einat, Paz

“…MicroRNAs (MIRs) are a novel group of conserved short approximately 22 nucleotide-long RNAs with important roles in regulating gene expression. We have…”
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MicroRNA expression patterns and function in endodermal differentiation of human embryonic stem cells by Tzur, Galit, Levy, Asaf, Meiri, Eti, Barad, Omer, Spector, Yael, Bentwich, Zvi, Mizrahi, Lina, Katzenellenbogen, Mark, Ben-Shushan, Etti, Reubinoff, Benjamin E, Galun, Eithan

“…microRNAs (miRNAs) are small noncoding RNAs that regulate cognate mRNAs post-transcriptionally. Human embryonic stem cells (hESC), which exhibit the…”
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Publisher Correction: Sex-dependent dominance maintains migration supergene in rainbow trout by Pearse, Devon E., Barson, Nicola J., Nome, Torfinn, Gao, Guangtu, Campbell, Matthew A., Abadía-Cardoso, Alicia, Anderson, Eric C., Rundio, David E., Williams, Thomas H., Naish, Kerry A., Moen, Thomas, Liu, Sixin, Kent, Matthew, Moser, Michel, Minkley, David R., Rondeau, Eric B., Brieuc, Marine S. O., Sandve, Simen Rød, Miller, Michael R., Cedillo, Lucydalila, Baruch, Kobi, Hernandez, Alvaro G., Ben-Zvi, Gil, Shem-Tov, Doron, Barad, Omer, Kuzishchin, Kirill, Garza, John Carlos, Lindley, Steven T., Koop, Ben F., Thorgaard, Gary H., Palti, Yniv, Lien, Sigbjørn

“…An amendment to this paper has been published and can be accessed via a link at the top of the paper…”
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Design principle of gene expression used by human stem cells: implication for pluripotency by Golan-Mashiach, Michal, Dazard, Jean-Eudes, Gerecht-Nir, Sharon, Amariglio, Ninette, Fisher, Tamar, Jacob-Hirsch, Jasmine, Bielorai, Bella, Osenberg, Sivan, Barad, Omer, Getz, Gad, Toren, Amos, Rechavi, Gideon, Itskovitz-Eldor, Joseph, Domany, Eytan, Givol, David

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Draft Assembly of Elite Inbred Line PH207 Provides Insights into Genomic and Transcriptome Diversity in Maize by Hirsch, Candice N., Hirsch, Cory D., Brohammer, Alex B., Bowman, Megan J., Soifer, Ilya, Barad, Omer, Shem-Tov, Doron, Baruch, Kobi, Lu, Fei, Hernandez, Alvaro G., Fields, Christopher J., Wright, Chris L., Koehler, Klaus, Springer, Nathan M., Buckler, Edward, Buell, C. Robin, de Leon, Natalia, Kaeppler, Shawn M., Childs, Kevin L., Mikel, Mark A.

“…Intense artificial selection over the last 100 years has produced elite maize (Zea mays) inbred lines that combine to produce high-yielding hybrids. To further…”
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Deciphering genetic factors that determine melon fruit‐quality traits using RNA‐Seq‐based high‐resolution QTL and eQTL mapping by Galpaz, Navot, Gonda, Itay, Shem‐Tov, Doron, Barad, Omer, Tzuri, Galil, Lev, Shery, Fei, Zhangjun, Xu, Yimin, Mao, Linyong, Jiao, Chen, Harel‐Beja, Rotem, Doron‐Faigenboim, Adi, Tzfadia, Oren, Bar, Einat, Meir, Ayala, Sa'ar, Uzi, Fait, Aaron, Halperin, Eran, Kenigswald, Merav, Fallik, Elazar, Lombardi, Nadia, Kol, Guy, Ronen, Gil, Burger, Yosef, Gur, Amit, Tadmor, Ya'akov, Portnoy, Vitaly, Schaffer, Arthur A., Lewinsohn, Efraim, Giovannoni, James J., Katzir, Nurit

“…Summary Combined quantitative trait loci (QTL) and expression‐QTL (eQTL) mapping analysis was performed to identify genetic factors affecting melon (Cucumis…”
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Mostly natural sequencing-by-synthesis for scRNA-seq using Ultima sequencing by Simmons, Sean K., Lithwick-Yanai, Gila, Adiconis, Xian, Oberstrass, Florian, Iremadze, Nika, Geiger-Schuller, Kathryn, Thakore, Pratiksha I., Frangieh, Chris J., Barad, Omer, Almogy, Gilad, Rozenblatt-Rosen, Orit, Regev, Aviv, Lipson, Doron, Levin, Joshua Z.

“…Here we introduce a mostly natural sequencing-by-synthesis (mnSBS) method for single-cell RNA sequencing (scRNA-seq), adapted to the Ultima genomics platform,…”
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Abstract 2946: Characterizing the genomic landscapes of breast and lung tumors using cost-effective whole genome sequencing by Benjamin, Hila, Soifer, Ilya, Shem-Tov, Doron, Levy, Maya, Tuncay, Islam Oguz, Oh, Baek-Lok, Shin, Jong-Yeon, Ju, Young Seok, Lee, Sangmoon, Barad, Omer, Lipson, Doron

“…Abstract Whole Genome Sequencing (WGS) has emerged as a pivotal tool for unraveling the intricate genomic alterations underlying cancer, enabling the detection…”
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Abstract 4926: Advancements in somatic variant calling from UG100 whole genome and whole exome sequencing data by Shem-Tov, Doron, Levy, Maya, Hornung, Gil, Soifer, Ilya, Benjamin, Hila, Jaimovich, Ariel, Blattler, Adam, Brandler, William, Sugar, Robert, Kinde, Isaac, Barad, Omer, Lipson, Doron

“…Abstract Somatic variant calling involves the identification of genomic alterations that occur in somatic cells, requiring deep coverage to enable high…”
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Efficiency and specificity in microRNA biogenesis by Barad, Omer, Mann, Mati, Chapnik, Elik, Shenoy, Archana, Blelloch, Robert, Barkai, Naama, Hornstein, Eran

“…Primary microRNA cleavage by the Microprocessor complex comprising Drosha and DGCR8 needs to be specific yet efficient. Mathematical modeling complemented with…”
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Abstract 3134: Calling somatic variants from UG100 data using deep learning by Levy, Maya, Shem-Tov, Doron, Benjamin, Hila, Benjamin, Sima, Soifer, Ilya, Gilad, Shlomit, Lebanony, Danit, Iremadze, Nika, Meiri, Eti, Lipson, Doron, Barad, Omer

“…Abstract UG100 is a novel next-generation sequencing platform that combines high throughput with significantly lower sequencing cost. Previous studies have…”
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Abstract 337: Balanced-strand sequencing for highly efficient duplex variant calling in circulating tumor DNA by Widman, Adam, Cheng, Alexandre P., Sossin, Aaron, Rajagopalan, Srinivas, Al Assaad, Majd, Deochand, Sunil, Steinsnyder, Zoe, Manaa, Dina, Marton, Melissa, Reeves, Catherine, Rusinek, Itai, Meiri, Eti, Barad, Omer, Shipony, Zohar, Gilad, Shlomit, Jaimovich, Ariel, Sigouros, Michael, Manohar, Jyothi, King, Abigail, Wilkes, David, Otilano, John, Elemento, Olivier, Faltas, Bishoy M., Mosquera, Juan M., Landau, Dan A.

“…Abstract Several approaches for the detection of circulating tumor DNA (ctDNA) are anchored in the accurate identification of cancer-specific single nucleotide…”
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