Search Results - "Banakis, Stephanie"

Emergence of transmissible SARS-CoV-2 variants with decreased sensitivity to antivirals in immunocompromised patients with persistent infections by Nooruzzaman, Mohammed, Johnson, Katherine E. E., Rani, Ruchi, Finkelsztein, Eli J., Caserta, Leonardo C., Kodiyanplakkal, Rosy P., Wang, Wei, Hsu, Jingmei, Salpietro, Maria T., Banakis, Stephanie, Albert, Joshua, Westblade, Lars F., Zanettini, Claudio, Marchionni, Luigi, Soave, Rosemary, Ghedin, Elodie, Diel, Diego G., Salvatore, Mirella

“…We investigated the impact of antiviral treatment on the emergence of SARS-CoV-2 resistance during persistent infections in immunocompromised patients ( n  =…”
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Yearlong COVID-19 Infection Reveals Within-Host Evolution of SARS-CoV-2 in a Patient With B-Cell Depletion by Nussenblatt, Veronique, Roder, Allison E, Das, Sanchita, de Wit, Emmie, Youn, Jung-Ho, Banakis, Stephanie, Mushegian, Alexandra, Mederos, Christopher, Wang, Wei, Chung, Matthew, Pérez-Pérez, Lizzette, Palmore, Tara, Brudno, Jennifer N, Kochenderfer, James N, Ghedin, Elodie

“…Abstract B-cell–depleting therapies may lead to prolonged disease and viral shedding in individuals infected with severe acute respiratory syndrome coronavirus…”
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Functional lower airways genomic profiling of the microbiome to capture active microbial metabolism by Sulaiman, Imran, Wu, Benjamin G, Li, Yonghua, Tsay, Jun-Chieh, Sauthoff, Maya, Scott, Adrienne S, Ji, Kun, Koralov, Sergei B, Weiden, Michael, Clemente, Jose, Jones, Drew, Huang, Yvonne J, Stringer, Kathleen A, Zhang, Lingdi, Geber, Adam, Banakis, Stephanie, Tipton, Laura, Ghedin, Elodie, Segal, Leopoldo N

“…Microbiome studies of the lower airway based on bacterial 16S rRNA gene sequencing assess microbial community structure but can only infer functional…”
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Successful lung transplantation using an allograft from a COVID-19–recovered donor: a potential role for subgenomic RNA to guide organ utilization by Saharia, Kapil K., Ramelli, Sabrina C., Stein, Sydney R., Roder, Allison E., Kreitman, Allie, Banakis, Stephanie, Chung, Joon-Yong, Burbelo, Peter D., Singh, Manmeet, Reed, Robert M., Patel, Vipul, Rabin, Joseph, Krupnick, Alexander S., Cohen, Jeffrey I., de Wit, Emmie, Ghedin, Elodie, Hewitt, Stephen M., Vannella, Kevin M., Chertow, Daniel S., Grazioli, Alison

“…Although the risk of SARS-CoV-2 transmission through lung transplantation from acutely infected donors is high, the risks of virus transmission and long-term…”
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CD4 + and CD8 + T cells are required to prevent SARS-CoV-2 persistence in the nasal compartment by Kar, Meenakshi, Johnson, Katherine E E, Vanderheiden, Abigail, Elrod, Elizabeth J, Floyd, Katharine, Geerling, Elizabeth, Stone, E Taylor, Salinas, Eduardo, Banakis, Stephanie, Wang, Wei, Sathish, Shruti, Shrihari, Swathi, Davis-Gardner, Meredith E, Kohlmeier, Jacob, Pinto, Amelia, Klein, Robyn, Grakoui, Arash, Ghedin, Elodie, Suthar, Mehul S

“…SARS-CoV-2 infection induces the generation of virus-specific CD4 and CD8 effector and memory T cells. However, the contribution of T cells in controlling…”
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Microbial signatures in the lower airways of mechanically ventilated COVID19 patients associated with poor clinical outcome by Sulaiman, Imran, Chung, Matthew, Angel, Luis, Tsay, Jun-Chieh J., Wu, Benjamin G., Yeung, Stephen T., Krolikowski, Kelsey, Li, Yonghua, Duerr, Ralf, Schluger, Rosemary, Thannickal, Sara A., Koide, Akiko, Rafeq, Samaan, Barnett, Clea, Postelnicu, Radu, Wang, Chang, Banakis, Stephanie, Pérez-Pérez, Lizzette, Shen, Guomiao, Jour, George, Meyn, Peter, Carpenito, Joseph, Liu, Xiuxiu, Ji, Kun, Collazo, Destiny, Labarbiera, Anthony, Amoroso, Nancy, Brosnahan, Shari, Mukherjee, Vikramjit, Kaufman, David, Bakker, Jan, Lubinsky, Anthony, Pradhan, Deepak, Sterman, Daniel H., Weiden, Michael, Hegu, Adriana, Evans, Laura, Uyeki, Timothy M., Clemente, Jose C., de Wit, Emmie, Schmidt, Ann Marie, Shopsin, Bo, Desvignes, Ludovic, Wang, Chan, Li, Huilin, Zhang, Bin, Forst, Christian V., Koide, Shohei, Stapleford, Kenneth A., Khanna, Kamal M., Ghedin, Elodie, Segal, Leopoldo N.

“…Respiratory failure is associated with increased mortality in COVID-19 patients. There are no validated lower airway biomarkers to predict clinical outcome. We…”
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