Search Results - "Baller, Joshua A"

Efficient design and assembly of custom TALEN and other TAL effector-based constructs for DNA targeting by Cermak, Tomas, Doyle, Erin L., Christian, Michelle, Wang, Li, Zhang, Yong, Schmidt, Clarice, Baller, Joshua A., Somia, Nikunj V., Bogdanove, Adam J., Voytas, Daniel F.

“…TALENs are important new tools for genome engineering. Fusions of transcription activator-like (TAL) effectors of plant pathogenic Xanthomonas spp. to the FokI…”
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Transcription Activator-Like Effector Nucleases Enable Efficient Plant Genome Engineering by Zhang, Yong, Zhang, Feng, Li, Xiaohong, Baller, Joshua A., Qi, Yiping, Starker, Colby G., Bogdanove, Adam J., Voytas, Daniel F.

“…The ability to precisely engineer plant genomes offers much potential for advancing basic and applied plant biology. Here, we describe methods for the targeted…”
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The lung tissue microbiota of mild and moderate chronic obstructive pulmonary disease by Pragman, Alexa A, Lyu, Tianmeng, Baller, Joshua A, Gould, Trevor J, Kelly, Rosemary F, Reilly, Cavan S, Isaacson, Richard E, Wendt, Chris H

“…Oral taxa are often found in the chronic obstructive pulmonary disease (COPD) lung microbiota, but it is not clear if this is due to a physiologic process such…”
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Increasing frequencies of site-specific mutagenesis and gene targeting in Arabidopsis by manipulating DNA repair pathways by Qi, Yiping, Zhang, Yong, Zhang, Feng, Baller, Joshua A, Cleland, Spencer C, Ryu, Yungil, Starker, Colby G, Voytas, Daniel F

“…Improved methods for engineering sequence-specific nucleases, including zinc finger nucleases (ZFNs) and TAL effector nucleases (TALENs), have made it possible…”
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A nucleosomal surface defines an integration hotspot for the Saccharomyces cerevisiae Ty1 retrotransposon by Baller, Joshua A, Gao, Jiquan, Stamenova, Radostina, Curcio, M Joan, Voytas, Daniel F

“…Ty1, the most abundant retrotransposon in Saccharomyces cerevisiae, integrates preferentially upstream of genes transcribed by RNA polymerase III (Pol III)…”
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Silencing is noisy: population and cell level noise in telomere-adjacent genes is dependent on telomere position and sir2 by Anderson, Matthew Z, Gerstein, Aleeza C, Wigen, Lauren, Baller, Joshua A, Berman, Judith

“…Cell-to-cell gene expression noise is thought to be an important mechanism for generating phenotypic diversity. Furthermore, telomeric regions are major sites…”
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Access to DNA establishes a secondary target site bias for the yeast retrotransposon Ty5 by Baller, Joshua A, Gao, Jiquan, Voytas, Daniel F

“…Integration sites for many retrotransposons and retroviruses are determined by interactions between retroelement-encoded integrases and specific DNA-bound…”
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The Three Clades of the Telomere-Associated TLO Gene Family of Candida albicans Have Different Splicing, Localization, and Expression Features by Anderson, Matthew Z, Baller, Joshua A, Dulmage, Keely, Wigen, Lauren, Berman, Judith

“…Classifications Services EC Citing Articles Google Scholar PubMed Related Content Social Bookmarking CiteULike Delicious Digg Facebook Google+ Mendeley Reddit…”
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Comprehensive Functional Analysis of the Enterococcus faecalis Core Genome Using an Ordered, Sequence-Defined Collection of Insertional Mutations in Strain OG1RF by Dale, Jennifer L, Beckman, Kenneth B, Willett, Julia L E, Nilson, Jennifer L, Palani, Nagendra P, Baller, Joshua A, Hauge, Adam, Gohl, Daryl M, Erickson, Raymond, Manias, Dawn A, Sadowsky, Michael J, Dunny, Gary M

“…Enterococcus faecalis is a common commensal bacterium in animal gastrointestinal (GI) tracts and a leading cause of opportunistic infections of humans in the…”
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Origin replication complex binding, nucleosome depletion patterns, and a primary sequence motif can predict origins of replication in a genome with epigenetic centromeres by Tsai, Hung-Ji, Baller, Joshua A, Liachko, Ivan, Koren, Amnon, Burrack, Laura S, Hickman, Meleah A, Thevandavakkam, Mathuravani A, Rusche, Laura N, Berman, Judith

“…Origins of DNA replication are key genetic elements, yet their identification remains elusive in most organisms. In previous work, we found that centromeres…”
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An RNA polymerase III subunit determines sites of retrotransposon integration by Bridier-Nahmias, Antoine, Tchalikian-Cosson, Aurélie, Baller, Joshua A., Menouni, Rachid, Fayol, Hélène, Flores, Amando, Saïb, Ali, Werner, Michel, Voytas, Daniel F., Lesage, Pascale

“…Mobile genetic elements are ubiquitous. Their integration site influences genome stability and gene expression. The Ty1 retrotransposon of the yeast…”
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Using the Daphnia magna Transcriptome to Distinguish Water Source: Wetland and Stormwater Case Studies by Jankowski, Mark D., Fairbairn, David J., Baller, Joshua A., Westerhoff, Benjamin M., Schoenfuss, Heiko L.

“…A major challenge in ecotoxicology is accurately and sufficiently measuring chemical exposures and biological effects given the presence of complex and dynamic…”
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ZFN, TALEN and CRISPR-Cas9 mediated homology directed gene insertion in Arabidopsis: A disconnect between somatic and germinal cells by Shan, Qiwei, Baltes, Nicholas J., Atkins, Paul, Kirkland, Elida R., Zhang, Yong, Baller, Joshua A., Lowder, Levi G., Malzahn, Aimee A., Haugner, John C., Seelig, Burckhard, Voytas, Daniel F., Qi, Yiping

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Histone H2AX and the small RNA pathway modulate both non-homologous end-joining and homologous recombination in plants by Qi, Yiping, Zhang, Yong, Baller, Joshua A, Voytas, Daniel F

“…Using a zinc finger nuclease (ZFN) that creates a site-specific DNA double-strand break (DSB) at the endogenous ADH1 locus, we provide genetic evidence that…”
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Silencing Is Noisy: Population and Cell Level Noise in Telomere-Adjacent Genes Is Dependent on Telomere Position and Sir2: e1004436 by Anderson, Matthew Z, Gerstein, Aleeza C, Wigen, Lauren, Baller, Joshua A, Berman, Judith

“…Cell-to-cell gene expression noise is thought to be an important mechanism for generating phenotypic diversity. Furthermore, telomeric regions are major sites…”
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Retrotransposons. An RNA polymerase III subunit determines sites of retrotransposon integration by Bridier-Nahmias, Antoine, Tchalikian-Cosson, Aurélie, Baller, Joshua A, Menouni, Rachid, Fayol, Hélène, Flores, Amando, Saïb, Ali, Werner, Michel, Voytas, Daniel F, Lesage, Pascale

“…Mobile genetic elements are ubiquitous. Their integration site influences genome stability and gene expression. The Ty1 retrotransposon of the yeast…”
Get full text

Efficient design and assembly of custom TALEN and other TAL effector-based constructs for DNA targeting by Cermak, Tomas, Doyle, Erin L., Christian, Michelle, Wang, Li, Zhang, Yong, Schmidt, Clarice, Baller, Joshua A., Somia, Nikunj V., Bogdanove, Adam J., Voytas, Daniel F.

Get full text

Transcription Activator-Like Effector Nucleases Enable Efficient Plant Genome Engineering1[W][OA] by Zhang, Yong, Zhang, Feng, Li, Xiaohong, Baller, Joshua A., Qi, Yiping, Starker, Colby G., Bogdanove, Adam J., Voytas, Daniel F.

“…The ability to precisely engineer plant genomes offers much potential for advancing basic and applied plant biology. Here, we describe methods for the targeted…”
Get full text

The Lung Tissue Microbiota of Mild and Moderate Chronic Obstructive Pulmonary Disease by Pragman, Alexa A, Lyu, Tianmeng, Baller, Joshua A, Gould, Trevor, Kelly, Rosemary F, Reilly, Cavan S, Isaacson, Richard E, Wendt, Chris H

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Comprehensive Functional Analysis of the Enterococcus faecalis Core Genome Using an Ordered, Sequence-Defined Collection of Insertional Mutations in Strain OG1RF by Jennifer L. Dale, Kenneth B. Beckman, Julia L. E. Willett, Jennifer L. Nilson, Nagendra P. Palani, Joshua A. Baller, Adam Hauge, Daryl M. Gohl, Raymond Erickson, Dawn A. Manias, Michael J. Sadowsky, Gary M. Dunny

“…ABSTRACT Enterococcus faecalis is a common commensal bacterium in animal gastrointestinal (GI) tracts and a leading cause of opportunistic infections of humans…”
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