Search Results - "Baldoni, L"

Genomics in olive: applications and perspectives by Baldoni, L

“…Some initiatives have been recently undertaken in order to analyze some aspects of genetics and genomics of the olive tree, with particular reference to the…”
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The Paradox of Self-Fertile Varieties in the Context of Self-Incompatible Genotypes in Olive by Alagna, F, Caceres, M E, Pandolfi, S, Collani, S, Mousavi, S, Mariotti, R, Cultrera, N G M, Baldoni, L, Barcaccia, G

“…Olive, representing one of the most important fruit crops of the Mediterranean area, is characterized by a general low fruit yield, due to numerous…”
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Faster and more accurate assessment of differential transcript expression with Gibbs sampling and edgeR v4 by Baldoni, Pedro L, Chen, Lizhong, Smyth, Gordon K

“…Abstract This article further develops edgeR's divided-count approach for differential transcript expression (DTE) analysis of RNA-seq data to produce a faster…”
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Current Smoking Raises Risk of Incident Hypertension: Hispanic Community Health Study–Study of Latinos by Kaplan, Robert C, Baldoni, Pedro L, Strizich, Garrett M, Pérez-Stable, Eliseo J, Saccone, Nancy L, Peralta, Carmen A, Perreira, Krista M, Gellman, Marc D, Williams-Nguyen, Jessica S, Rodriguez, Carlos J, Lee, David J, Daviglus, Martha, Talavera, Gregory A, Lash, James P, Cai, Jianwen, Franceschini, Nora

“…Abstract Background Hypertension has been implicated as a smoking-related risk factor for cardiovascular disease but the dose–response relationship is…”
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Incidence of Hypertension Among US Hispanics/Latinos: The Hispanic Community Health Study/Study of Latinos, 2008 to 2017 by Elfassy, Tali, Zeki Al Hazzouri, Adina, Cai, Jianwen, Baldoni, Pedro L, Llabre, Maria M, Rundek, Tatjana, Raij, Leopoldo, Lash, James P, Talavera, Gregory A, Wassertheil-Smoller, Sylvia, Daviglus, Martha, Booth, 3rd, John N, Castaneda, Sheila F, Garcia, Melawhy, Schneiderman, Neil

“…Background Among US Hispanics/Latinos, the largest ethnic minority population in the United States, hypertension incidence has not been thoroughly reported…”
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Characterization and validation of olive FAD and SAD gene families: expression analysis in different tissues and during fruit development by Contreras, C., Mariotti, R., Mousavi, S., Baldoni, L., Guerrero, C., Roka, L., Cultrera, N., Pierantozzi, P., Maestri, D., Gentili, L., Tivani, M., Torres, M.

“…Stearoyl-ACP desaturases (SADs) and fatty acid desaturases (FADs) play a critical role in plant lipid metabolism and also affect oil fatty acid composition…”
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Precise and accurate power of the rank-sum test for a continuous outcome by Mollan, Katie R., Trumble, Ilana M., Reifeis, Sarah A., Ferrer, Orlando, Bay, Camden P., Baldoni, Pedro L., Hudgens, Michael G.

“…Accurate power calculations are essential in small studies containing expensive experimental units or high-stakes exposures. Herein, power of the Wilcoxon…”
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Comparative study of the discriminating capacity of RAPD, AFLP and SSR markers and of their effectiveness in establishing genetic relationships in olive by BELAJ, A, SATOVIC, Z, CIPRIANI, G, BALDONI, L, TESTOLIN, R, RALLO, L, TRUJILLO, I

“…RAPDs, AFLPs and SSRs were compared in terms of their informativeness and efficiency in a study of genetic diversity and relationships among 32 olive cultivars…”
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Microsatellite markers are powerful tools for discriminating among olive cultivars and assigning them to geographically defined populations by Sarri, V, Baldoni, L, Porceddu, A, Cultrera, N G M, Contento, A, Frediani, M, Belaj, A, Trujillo, I, Cionini, P G

“…Twelve simple sequence repeat (SSR) loci were used to differentiate among 118 cultivars sampled in several countries of the Mediterranean basin and to analyze…”
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first linkage map of olive (Olea europaea L.) cultivars using RAPD, AFLP, RFLP and SSR markers by LA ROSA, R, ANGIOLILLO, A, GUERRERO, C, PELLEGRINI, M, RALLO, L, BESNARD, G, BERVILLE, A, MARTIN, A, BALDONI, L

“…The first linkage map of the olive (Olea europaea L.) genome has been constructed using random amplified polymorphic DNA (RAPD) and amplified fragment length…”
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On the Use of Regression Calibration in a Complex Sampling Design With Application to the Hispanic Community Health Study/Study of Latinos by Baldoni, Pedro L, Sotres-Alvarez, Daniela, Lumley, Thomas, Shaw, Pamela A

“…Abstract Regression calibration is the most widely used method to adjust regression parameter estimates for covariate measurement error. Yet its application in…”
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Using RAPD and AFLP markers to distinguish individuals obtained by clonal selection of 'Arbequina' and 'Manzanilla de Sevilla' olive by Belaj, A, Rallo, L, Trujillo, I, Baldoni, L

“…Eight and seven clones, respectively selected within the olive cultivars 'Arbequina' and 'Manzanilla de Sevilla', were studied by means of randomly amplified…”
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Comparisons of statistical methods for handling attrition in a follow‐up visit with complex survey sampling by Cai, Jianwen, Zeng, Donglin, Li, Haolin, Butera, Nicole M., Baldoni, Pedro L., Maitra, Poulami, Dong, Li

“…Design‐based analysis, which accounts for the design features of the study, is commonly used to conduct data analysis in studies with complex survey sampling,…”
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Transferability of olive microsatellite loci across the genus Olea by RALLO, P, TENZER, I, GESSLER, C, BALDONI, L, DORADO, G, MARTIN, A

“…The transferability of microsatellite markers developed for olive cultivars ( Olea europaea L.) has been tested and confirmed in the Olea complex. Thirty two…”
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Dividing out quantification uncertainty allows efficient assessment of differential transcript expression with edgeR by Baldoni, Pedro L, Chen, Yunshun, Hediyeh-Zadeh, Soroor, Liao, Yang, Dong, Xueyi, Ritchie, Matthew E, Shi, Wei, Smyth, Gordon K

“…Differential expression analysis of RNA-seq is one of the most commonly performed bioinformatics analyses. Transcript-level quantifications are inherently more…”
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Efficient detection and classification of epigenomic changes under multiple conditions by Baldoni, Pedro L., Rashid, Naim U., Ibrahim, Joseph G.

“…Epigenomics, the study of the human genome and its interactions with proteins and other cellular elements, has become of significant interest in recent years…”
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Benchmarking long-read RNA-sequencing analysis tools using in silico mixtures by Dong, Xueyi, Du, Mei R. M., Gouil, Quentin, Tian, Luyi, Jabbari, Jafar S., Bowden, Rory, Baldoni, Pedro L., Chen, Yunshun, Smyth, Gordon K., Amarasinghe, Shanika L., Law, Charity W., Ritchie, Matthew E.

“…The lack of benchmark data sets with inbuilt ground-truth makes it challenging to compare the performance of existing long-read isoform detection and…”
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Olive genetic diversity assessed using amplified fragment length polymorphisms by Angiolillo, A, Mencuccini, M, Baldoni, L

“…Amplified fragment length polymorphism (AFLP) analysis was used to study the genetic variation within and among populations of genus Olea. A group of…”
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Self-incompatibility in olive: a new hypothesis on the s-locus genes controlling pollen-pistil interaction by Collani, S, Galla, G, Ramina, A, Barcaccia, G, Alagna, F, Càceres, E.M, Baldoni, L, Muleo, R, Perrotta, G

“…Self-incompatibility is one of the most important barriers adopted by many flowering plants to prevent inbreeding, thus maintaining diversity within species…”
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Efficiency of SSR markers for exploring olive germplasm diversity through a genetic comparison between the USDA-NCGR and the CRA-OLI olive collections by Zelasco, S, Salimonti, A, Baldoni, L, Mariotti, R, Preece, J. E, Aradhya, M, Koehmstedt, A. M

“…The national olive collection at the United States Department of Agriculture-Agricultural Research Service National Clonal Germplasm Repository, Davis, CA…”
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