Search Results - "Bakken, E."

In their own words: Perspectives of IPV survivors on obtaining support within the healthcare system by Hargrave, Anita S, Dawson-Rose, Carol, Schillinger, Dean, Ng, Fiona, Valdez, Jessica, Rodriguez, Amanda, Cuca, Yvette P, Bakken, E Hayes, Kimberg, Leigh

“…Almost half of all women in the US experience intimate partner violence (IPV) in their lifetime. The US Preventive Services Task Force recommends IPV screening…”
Get full text

Single-nucleus and single-cell transcriptomes compared in matched cortical cell types by Bakken, Trygve E, Hodge, Rebecca D, Miller, Jeremy A, Yao, Zizhen, Nguyen, Thuc Nghi, Aevermann, Brian, Barkan, Eliza, Bertagnolli, Darren, Casper, Tamara, Dee, Nick, Garren, Emma, Goldy, Jeff, Graybuck, Lucas T, Kroll, Matthew, Lasken, Roger S, Lathia, Kanan, Parry, Sheana, Rimorin, Christine, Scheuermann, Richard H, Schork, Nicholas J, Shehata, Soraya I, Tieu, Michael, Phillips, John W, Bernard, Amy, Smith, Kimberly A, Zeng, Hongkui, Lein, Ed S, Tasic, Bosiljka

“…Transcriptomic profiling of complex tissues by single-nucleus RNA-sequencing (snRNA-seq) affords some advantages over single-cell RNA-sequencing (scRNA-seq)…”
Get full text

Sex-Based Analysis of De Novo Variants in Neurodevelopmental Disorders by Turner, Tychele N., Wilfert, Amy B., Bakken, Trygve E., Bernier, Raphael A., Pepper, Micah R., Zhang, Zhancheng, Torene, Rebecca I., Retterer, Kyle, Eichler, Evan E.

“…While genes with an excess of de novo mutations (DNMs) have been identified in children with neurodevelopmental disorders (NDDs), few studies focus on DNM…”
Get full text

A comparison of anatomic and cellular transcriptome structures across 40 human brain diseases by Zeighami, Yashar, Bakken, Trygve E, Nickl-Jockschat, Thomas, Peterson, Zeru, Jegga, Anil G, Miller, Jeremy A, Schulkin, Jay, Evans, Alan C, Lein, Ed S, Hawrylycz, Michael

“…Genes associated with risk for brain disease exhibit characteristic expression patterns that reflect both anatomical and cell type relationships. Brain-wide…”
Get full text

Single-cell transcriptomic evidence for dense intracortical neuropeptide networks by Smith, Stephen J, Sümbül, Uygar, Graybuck, Lucas T, Collman, Forrest, Seshamani, Sharmishtaa, Gala, Rohan, Gliko, Olga, Elabbady, Leila, Miller, Jeremy A, Bakken, Trygve E, Rossier, Jean, Yao, Zizhen, Lein, Ed, Zeng, Hongkui, Tasic, Bosiljka, Hawrylycz, Michael

“…Seeking new insights into the homeostasis, modulation and plasticity of cortical synaptic networks, we have analyzed results from a single-cell RNA-seq study…”
Get full text

Common cell type nomenclature for the mammalian brain by Miller, Jeremy A, Gouwens, Nathan W, Tasic, Bosiljka, Collman, Forrest, van Velthoven, Cindy Tj, Bakken, Trygve E, Hawrylycz, Michael J, Zeng, Hongkui, Lein, Ed S, Bernard, Amy

“…The advancement of single-cell RNA-sequencing technologies has led to an explosion of cell type definitions across multiple organs and organisms. While…”
Get full text

Parallel RNA and DNA analysis after deep sequencing (PRDD-seq) reveals cell type-specific lineage patterns in human brain by Huang, August Yue, Li, Pengpeng, Rodin, Rachel E., Kim, Sonia N., Dou, Yanmei, Kenny, Connor J., Akula, Shyam K., Hodge, Rebecca D., Bakken, Trygve E., Miller, Jeremy A., Lein, Ed S., Park, Peter J., Lee, Eunjung Alice, Walsh, Christopher A.

“…Elucidating the lineage relationships among different cell types is key to understanding human brain development. Here we developed parallel RNA and DNA…”
Get full text

Decentralized Voltage Stability Monitoring and Control With Distributed Computing Coordination by Lee, HyoJong, K. Srivastava, Anurag, G. Krishnan, Vignesh V., Niddodi, Shwetha, E. Bakken, David

“…The computing infrastructure to support the power grid monitoring and control evolves with the increasing system complexity and integration of distributed…”
Get full text

Embedded Maternal Mental Health Care in a Pediatric Primary Care Clinic: A Qualitative Exploration of Mothers’ Experiences by Young, Chelsea Anne, Burnett, Honora, Ballinger, Alexandra, Castro, Gloria, Steinberg, Shay, Nau, Melissa, Bakken, E. Hayes, Thomas, Melanie, Beck, Amy L.

“…The American Academy of Pediatrics recommends screening parents for postpartum depression during pediatric primary care visits. Unfortunately, many women who…”
Get full text

Study of inexpensive oxygen carriers for chemical looping combustion by Fossdal, A., Bakken, E., Øye, B.A., Schøning, C., Kaus, I., Mokkelbost, T., Larring, Y.

“…Norwegian industrial tailings and by-products, as well as naturally occurring minerals and ores have been surveyed with the purpose of identifying candidate…”
Get full text

Single nucleus multi-omics identifies human cortical cell regulatory genome diversity by Luo, Chongyuan, Liu, Hanqing, Xie, Fangming, Armand, Ethan J., Siletti, Kimberly, Bakken, Trygve E., Fang, Rongxin, Doyle, Wayne I., Stuart, Tim, Hodge, Rebecca D., Hu, Lijuan, Wang, Bang-An, Zhang, Zhuzhu, Preissl, Sebastian, Lee, Dong-Sung, Zhou, Jingtian, Niu, Sheng-Yong, Castanon, Rosa, Bartlett, Anna, Rivkin, Angeline, Wang, Xinxin, Lucero, Jacinta, Nery, Joseph R., Davis, David A., Mash, Deborah C., Satija, Rahul, Dixon, Jesse R., Linnarsson, Sten, Lein, Ed, Behrens, M. Margarita, Ren, Bing, Mukamel, Eran A., Ecker, Joseph R.

“…Single-cell technologies measure unique cellular signatures but are typically limited to a single modality. Computational approaches allow the fusion of…”
Get full text

Genetic identification of brain cell types underlying schizophrenia by Skene, Nathan G., Bryois, Julien, Bakken, Trygve E., Breen, Gerome, Crowley, James J., Gaspar, Héléna A., Giusti-Rodriguez, Paola, Hodge, Rebecca D., Miller, Jeremy A., Muñoz-Manchado, Ana B., O’Donovan, Michael C., Owen, Michael J., Pardiñas, Antonio F., Ryge, Jesper, Walters, James T. R., Linnarsson, Sten, Lein, Ed S., Sullivan, Patrick F., Hjerling-Leffler, Jens

“…With few exceptions, the marked advances in knowledge about the genetic basis of schizophrenia have not converged on findings that can be confidently used for…”
Get full text

GridStat: A Flexible QoS-Managed Data Dissemination Framework for the Power Grid by Gjermundrod, H., Bakken, D.E., Hauser, C.H., Bose, A.

“…With the increase in the monitoring of operational data at very high rates in high voltage substations and the ability to time synchronize these data with…”
Get full text

Spatiotemporal dynamics of the postnatal developing primate brain transcriptome by Bakken, Trygve E, Miller, Jeremy A, Luo, Rui, Bernard, Amy, Bennett, Jeffrey L, Lee, Chang-Kyu, Bertagnolli, Darren, Parikshak, Neelroop N, Smith, Kimberly A, Sunkin, Susan M, Amaral, David G, Geschwind, Daniel H, Lein, Ed S

“…Developmental changes in the temporal and spatial regulation of gene expression drive the emergence of normal mature brain function, while disruptions in these…”
Get full text

A Common MECP2 Haplotype Associates with Reduced Cortical Surface Area in Humans in Two Independent Populations by Joyner, Alexander H., Roddey, J. Cooper, Bloss, Cinnamon S., Bakken, Trygve E., Rimol, Lars M., Melle, Ingrid, Agartz, Ingrid, Djurovic, Srdjan, Topol, Eric J., Schork, Nicholas J., Andreassen, Ole A., Dale, Anders M., Stevens, Charles F.

“…The gene MECP2 is a well-known determinant of brain structure. Mutations in the MECP2 protein cause microencephalopathy and are associated with several…”
Get full text

Transcriptomic and morphophysiological evidence for a specialized human cortical GABAergic cell type by Boldog, Eszter, Bakken, Trygve E., Hodge, Rebecca D., Novotny, Mark, Aevermann, Brian D., Baka, Judith, Bordé, Sándor, Close, Jennie L., Diez-Fuertes, Francisco, Ding, Song-Lin, Faragó, Nóra, Kocsis, Ágnes K., Kovács, Balázs, Maltzer, Zoe, McCorrison, Jamison M., Miller, Jeremy A., Molnár, Gábor, Oláh, Gáspár, Ozsvár, Attila, Rózsa, Márton, Shehata, Soraya I., Smith, Kimberly A., Sunkin, Susan M., Tran, Danny N., Venepally, Pratap, Wall, Abby, Puskás, László G., Barzó, Pál, Steemers, Frank J., Schork, Nicholas J., Scheuermann, Richard H., Lasken, Roger S., Lein, Ed S., Tamás, Gábor

“…We describe convergent evidence from transcriptomics, morphology, and physiology for a specialized GABAergic neuron subtype in human cortex. Using unbiased…”
Get full text

Visual system scaling in teleost fish by Bakken, Trygve E., Stevens, Charles F.

“…Teleost fish grow continuously throughout their lifespan, and this growth includes visual system components: eyes, optic nerves, and brain. As fish grow, the…”
Get full text

Signature morpho-electric, transcriptomic, and dendritic properties of human layer 5 neocortical pyramidal neurons by Kalmbach, Brian E., Hodge, Rebecca D., Jorstad, Nikolas L., Owen, Scott, de Frates, Rebecca, Yanny, Anna Marie, Dalley, Rachel, Mallory, Matt, Graybuck, Lucas T., Radaelli, Cristina, Keene, C. Dirk, Gwinn, Ryder P., Silbergeld, Daniel L., Cobbs, Charles, Ojemann, Jeffrey G., Ko, Andrew L., Patel, Anoop P., Ellenbogen, Richard G., Bakken, Trygve E., Daigle, Tanya L., Dee, Nick, Lee, Brian R., McGraw, Medea, Nicovich, Philip R., Smith, Kimberly, Sorensen, Staci A., Tasic, Bosiljka, Zeng, Hongkui, Koch, Christof, Lein, Ed S., Ting, Jonathan T.

“…In the neocortex, subcerebral axonal projections originate largely from layer 5 (L5) extratelencephalic-projecting (ET) neurons. The unique morpho-electric…”
Get full text

Transcriptomic evidence that von Economo neurons are regionally specialized extratelencephalic-projecting excitatory neurons by Hodge, Rebecca D., Miller, Jeremy A., Novotny, Mark, Kalmbach, Brian E., Ting, Jonathan T., Bakken, Trygve E., Aevermann, Brian D., Barkan, Eliza R., Berkowitz-Cerasano, Madeline L., Cobbs, Charles, Diez-Fuertes, Francisco, Ding, Song-Lin, McCorrison, Jamison, Schork, Nicholas J., Shehata, Soraya I., Smith, Kimberly A., Sunkin, Susan M., Tran, Danny N., Venepally, Pratap, Yanny, Anna Marie, Steemers, Frank J., Phillips, John W., Bernard, Amy, Koch, Christof, Lasken, Roger S., Scheuermann, Richard H., Lein, Ed S.

“…von Economo neurons (VENs) are bipolar, spindle-shaped neurons restricted to layer 5 of human frontoinsula and anterior cingulate cortex that appear to be…”
Get full text

Neurodevelopmental disease genes implicated by de novo mutation and copy number variation morbidity by Coe, Bradley P., Stessman, Holly A. F., Sulovari, Arvis, Geisheker, Madeleine R., Bakken, Trygve E., Lake, Allison M., Dougherty, Joseph D., Lein, Ed S., Hormozdiari, Fereydoun, Bernier, Raphael A., Eichler, Evan E.

“…We combined de novo mutation (DNM) data from 10,927 individuals with developmental delay and autism to identify 253 candidate neurodevelopmental disease genes…”
Get full text