Search Results - "Baker, David"

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    What has de novo protein design taught us about protein folding and biophysics? by Baker, David

    Published in Protein science (01-04-2019)
    “…Recent progress in de novo protein design has led to an explosion of new protein structures, functions and assemblies. In this essay, I consider how the…”
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    Journal Article
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    History of The Joint Commission’s Pain Standards: Lessons for Today’s Prescription Opioid Epidemic by Baker, David W

    “…Today, the US is in the midst of a prescription opioid epidemic. Numerous interventions have been advocated to address the problem. Although these efforts are…”
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    Boosted Oxygen Evolution Reactivity by Igniting Double Exchange Interaction in Spinel Oxides by Li, Jiangtian, Chu, Deryn, Dong, Hong, Baker, David R, Jiang, Rongzhong

    Published in Journal of the American Chemical Society (08-01-2020)
    “…A double-exchange interaction (DEI) was demonstrated to boost the oxygen evolution reaction (OER) in spinel oxides. DEI was ignited by synergistic actions of…”
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    Spatial and temporal occurrence of pharmaceuticals and illicit drugs in the aqueous environment and during wastewater treatment: New developments by Baker, David R., Kasprzyk-Hordern, Barbara

    Published in The Science of the total environment (01-06-2013)
    “…This paper presents, for the first time, spatial and temporal occurrence of a comprehensive set of >60 pharmaceuticals, illicit drugs and their metabolites in…”
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    The Relationship Between Online Social Networking and Depression: A Systematic Review of Quantitative Studies by Baker, David A, Algorta, Guillermo Perez

    “…Online social networking sites (SNSs) such as Facebook, Twitter, and MySpace are used by billions of people every day to communicate and interact with others…”
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    TGF-β-Mediated Epithelial-Mesenchymal Transition and Cancer Metastasis by Hao, Yang, Baker, David, Ten Dijke, Peter

    “…Transforming growth factor β (TGF-β) is a secreted cytokine that regulates cell proliferation, migration, and the differentiation of a plethora of different…”
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    Improved protein structure prediction using predicted interresidue orientations by Yang, Jianyi, Anishchenko, Ivan, Park, Hahnbeom, Peng, Zhenling, Ovchinnikov, Sergey, Baker, David

    “…The prediction of interresidue contacts and distances from coevolutionary data using deep learning has considerably advanced protein structure prediction…”
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    Assessing the utility of coevolution-based residue–residue contact predictions in a sequence- and structure-rich era by Kamisetty, Hetunandan, Ovchinnikov, Sergey, Baker, David

    “…Recently developed methods have shown considerable promise in predicting residue–residue contacts in protein 3D structures using evolutionary covariance…”
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    Interannual variability of cyanobacterial blooms in Lake Erie by Stumpf, Richard P, Wynne, Timothy T, Baker, David B, Fahnenstiel, Gary L

    Published in PloS one (01-08-2012)
    “…After a 20-year absence, severe cyanobacterial blooms have returned to Lake Erie in the last decade, in spite of negligible change in the annual load of total…”
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    The coming of age of de novo protein design by Huang, Po-Ssu, Boyken, Scott E., Baker, David

    Published in Nature (London) (15-09-2016)
    “…There are 20 200 possible amino-acid sequences for a 200-residue protein, of which the natural evolutionary process has sampled only an infinitesimal subset…”
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    Design of ordered two-dimensional arrays mediated by noncovalent protein-protein interfaces by Gonen, Shane, DiMaio, Frank, Gonen, Tamir, Baker, David

    “…We describe a general approach to designing two-dimensional (2D) protein arrays mediated by noncovalent protein-protein interfaces. Protein homo-oligomers are…”
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    Malaria gametocytogenesis by Baker, David A

    Published in Molecular and biochemical parasitology (01-08-2010)
    “…Male and female gametocytes are the components of the malaria parasite life cycle which are taken up from an infected host bloodstream by mosquitoes and thus…”
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    Advances in protein-amino acid nutrition of poultry by Baker, David H

    Published in Amino acids (01-05-2009)
    “…The ideal protein concept has allowed progress in defining requirements as well as the limiting order of amino acids in corn, soybean meal, and a corn-soybean…”
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    Robust and accurate prediction of residue-residue interactions across protein interfaces using evolutionary information by Ovchinnikov, Sergey, Kamisetty, Hetunandan, Baker, David

    Published in eLife (01-05-2014)
    “…Do the amino acid sequence identities of residues that make contact across protein interfaces covary during evolution? If so, such covariance could be used to…”
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