Search Results - "Bakó, Imre"
-
1
Variations of the Hydrogen Bonding and Hydrogen-Bonded Network in Ethanol–Water Mixtures on Cooling
Published in The journal of physical chemistry. B (05-07-2018)“…Molecular dynamics computer simulations have been conducted for ethanol–water liquid mixtures in the water-rich side of the composition range, with 10, 20, and…”
Get full text
Journal Article -
2
Connecting Diffraction Experiments and Network Analysis Tools for the Study of Hydrogen-Bonded Networks
Published in The journal of physical chemistry. B (13-04-2023)“…A self-consistent scheme is presented that is applicable for revealing details of the microscopic structure of hydrogen-bonded liquids, including the…”
Get full text
Journal Article -
3
Systematic Study of Different Types of Interactions in α-, β- and γ-Cyclodextrin: Quantum Chemical Investigation
Published in Molecules (Basel, Switzerland) (01-05-2024)“…In this work, comprehensive ab initio quantum chemical calculations using the DFT level of theory were performed to characterize the stabilization interactions…”
Get full text
Journal Article -
4
Hierarchy of the Collective Effects in Water Clusters
Published in The journal of physical chemistry. A, Molecules, spectroscopy, kinetics, environment, & general theory (04-02-2016)“…The results of dipole moment as well as of intra- and intermolecular bond order calculations indicate the big importance of collective electrostatic effects…”
Get full text
Journal Article -
5
On Dipole Moments and Hydrogen Bond Identification in Water Clusters
Published in The journal of physical chemistry. A, Molecules, spectroscopy, kinetics, environment, & general theory (30-06-2016)“…It is demonstrated that the localized orbitals calculated for a water cluster have small delocalization tails along the hydrogen bonds, that are crucial in…”
Get full text
Journal Article -
6
Two Faces of the Two-Phase Thermodynamic Model
Published in Journal of chemical theory and computation (09-11-2021)“…The quantum harmonic model and the two-phase thermodynamic method (2PT) are widely used to obtain quantum-corrected properties such as isobaric heat capacities…”
Get full text
Journal Article -
7
Molecular Dynamics Simulation Studies of the Temperature-Dependent Structure and Dynamics of Isopropanol–Water Liquid Mixtures at Low Alcohol Content
Published in The journal of physical chemistry. B (05-09-2019)“…Series of molecular dynamics simulations for 2-propanol–water mixtures, as a function of temperature (between freezing and room temperature) and composition (x…”
Get full text
Journal Article -
8
Decreasing temperature enhances the formation of sixfold hydrogen bonded rings in water-rich water-methanol mixtures
Published in Scientific reports (21-04-2017)“…The evolution of the structure of liquid water-methanol mixtures as a function of temperature has been studied by molecular dynamics simulations, with a focus…”
Get full text
Journal Article -
9
Outstanding Properties of the Hydration Shell around β‑d‑Glucose: A Computational Study
Published in ACS omega (07-05-2024)“…Ab initio molecular dynamics (AIMD) simulations have been performed on aqueous solutions of four simple sugars, α-d-glucose, β-d-glucose, α-d-mannose, and…”
Get full text
Journal Article -
10
Molecular aggregation in liquid water: Laplace spectra and spectral clustering of H-bonded network
Published in Journal of molecular liquids (01-04-2021)“…Molecular dynamics simulations of pure ambient liquid water were performed. Hydrogen bond network properties were determined by calculation of eigenvectors and…”
Get full text
Journal Article -
11
Mechanism of Heterolytic Hydrogen Splitting by Frustrated Lewis Pairs: Comparison of Static and Dynamic Models
Published in ACS catalysis (05-07-2019)“…Free energy surfaces generated via ab initio molecular dynamics simulations for H2 activation reactions with intramolecular frustrated Lewis pairs (FLPs) point…”
Get full text
Journal Article -
12
Many-Body Energy Decomposition with Basis Set Superposition Error Corrections
Published in Journal of chemical theory and computation (09-05-2017)“…The problem of performing many-body decompositions of energy is considered in the case when BSSE corrections are also performed. It is discussed that the two…”
Get full text
Journal Article -
13
Structural and Dynamic Heterogeneity of Capillary Wave Fronts at Aqueous Interfaces
Published in The journal of physical chemistry. B (28-09-2017)“…Using a unique combination of slab-layering analyses and identification of truly interfacial molecules, this work examines water/vapor and water/n-hexane…”
Get full text
Journal Article -
14
Nuclear Quantum Effects from the Analysis of Smoothed Trajectories: Pilot Study for Water
Published in Journal of chemical theory and computation (12-05-2020)“…Nuclear quantum effects have significant contributions to thermodynamic quantities and structural properties; furthermore, very expensive methods are necessary…”
Get full text
Journal Article -
15
Conceptual Problem with Calculating Electron Densities in Finite Basis Density Functional Theory
Published in Journal of chemical theory and computation (12-09-2017)“…It is discussed that finite basis Density Functional Theory (DFT) calculations using a single Kohn–Sham determinant cannot reproduce, in a strict mathematical…”
Get full text
Journal Article -
16
Theoretical insights into water network of B-DNA duplex with Watson-Crick and Hoogsteen base pairing geometries
Published in Journal of molecular liquids (15-09-2022)“…•MD simulations on three solvated B-DNA structures including base pairs in Watson-Crick and Hoogsteen pairing modes.•Model proposed to identify water molecules…”
Get full text
Journal Article -
17
The influence of cations on the dipole moments of neighboring polar molecules
Published in International journal of quantum chemistry (15-04-2022)“…In this article we show how the dipole moment of a single molecule in a cluster can be calculated and used for describing the polarization effect…”
Get full text
Journal Article -
18
Effects of H-bond asymmetry on the electronic properties of liquid water – An AIMD analysis
Published in Journal of molecular liquids (01-11-2019)“…The effects of an asymmetric environment on the electronic properties of a water molecule in liquid water are in focus in this paper and were analysed from ab…”
Get full text
Journal Article -
19
Nuclear quantum effects: Their relevance in neutron diffraction studies of liquid water
Published in Journal of molecular liquids (01-03-2021)“…Corrections for nuclear quantum effects (NQE) have been calculated for classical molecular dynamics (MD) simulation models of light (H2O), heavy (D2O) and…”
Get full text
Journal Article -
20
Hydration sphere structure of proteins: A theoretical study
Published in Journal of molecular liquids (01-07-2017)“…Hydration is essential for the proper biological activity of biomolecules. We studied the water network around insulin (as a model protein) in aqueous NaCl…”
Get full text
Journal Article