Search Results - "Baftizadeh, Fahimeh"

A taxonomy of transcriptomic cell types across the isocortex and hippocampal formation by Yao, Zizhen, van Velthoven, Cindy T.J., Nguyen, Thuc Nghi, Goldy, Jeff, Sedeno-Cortes, Adriana E., Baftizadeh, Fahimeh, Bertagnolli, Darren, Casper, Tamara, Chiang, Megan, Crichton, Kirsten, Ding, Song-Lin, Fong, Olivia, Garren, Emma, Glandon, Alexandra, Gouwens, Nathan W., Gray, James, Graybuck, Lucas T., Hawrylycz, Michael J., Hirschstein, Daniel, Kroll, Matthew, Lathia, Kanan, Lee, Changkyu, Levi, Boaz, McMillen, Delissa, Mok, Stephanie, Pham, Thanh, Ren, Qingzhong, Rimorin, Christine, Shapovalova, Nadiya, Sulc, Josef, Sunkin, Susan M., Tieu, Michael, Torkelson, Amy, Tung, Herman, Ward, Katelyn, Dee, Nick, Smith, Kimberly A., Tasic, Bosiljka, Zeng, Hongkui

“…The isocortex and hippocampal formation (HPF) in the mammalian brain play critical roles in perception, cognition, emotion, and learning. We profiled ∼1.3…”
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Multidimensional View of Amyloid Fibril Nucleation in Atomistic Detail by Baftizadeh, Fahimeh, Biarnes, Xevi, Pietrucci, Fabio, Affinito, Fabio, Laio, Alessandro

“…Starting from a disordered aggregate, we have simulated the formation of ordered amyloid-like beta structures in a system formed by 18 polyvaline chains in…”
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The inverted free energy landscape of an intrinsically disordered peptide by simulations and experiments by Granata, Daniele, Baftizadeh, Fahimeh, Habchi, Johnny, Galvagnion, Celine, De Simone, Alfonso, Camilloni, Carlo, Laio, Alessandro, Vendruscolo, Michele

“…The free energy landscape theory has been very successful in rationalizing the folding behaviour of globular proteins, as this representation provides…”
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Integrated Morphoelectric and Transcriptomic Classification of Cortical GABAergic Cells by Gouwens, Nathan W., Sorensen, Staci A., Baftizadeh, Fahimeh, Budzillo, Agata, Lee, Brian R., Jarsky, Tim, Alfiler, Lauren, Baker, Katherine, Barkan, Eliza, Berry, Kyla, Bertagnolli, Darren, Bickley, Kris, Bomben, Jasmine, Braun, Thomas, Brouner, Krissy, Casper, Tamara, Crichton, Kirsten, Daigle, Tanya L., Dalley, Rachel, de Frates, Rebecca A., Dee, Nick, Desta, Tsega, Lee, Samuel Dingman, Dotson, Nadezhda, Egdorf, Tom, Ellingwood, Lauren, Enstrom, Rachel, Esposito, Luke, Farrell, Colin, Feng, David, Fong, Olivia, Gala, Rohan, Gamlin, Clare, Gary, Amanda, Glandon, Alexandra, Goldy, Jeff, Gorham, Melissa, Graybuck, Lucas, Gu, Hong, Hadley, Kristen, Hawrylycz, Michael J., Henry, Alex M., Hill, DiJon, Hupp, Madie, Kebede, Sara, Kim, Tae Kyung, Kim, Lisa, Kroll, Matthew, Lee, Changkyu, Link, Katherine E., Mallory, Matthew, Mann, Rusty, Maxwell, Michelle, McGraw, Medea, McMillen, Delissa, Mukora, Alice, Ng, Lindsay, Ng, Lydia, Ngo, Kiet, Nicovich, Philip R., Oldre, Aaron, Park, Daniel, Peng, Hanchuan, Penn, Osnat, Pham, Thanh, Pom, Alice, Popović, Zoran, Potekhina, Lydia, Rajanbabu, Ramkumar, Ransford, Shea, Reid, David, Rimorin, Christine, Robertson, Miranda, Ronellenfitch, Kara, Ruiz, Augustin, Sandman, David, Smith, Kimberly, Sulc, Josef, Sunkin, Susan M., Szafer, Aaron, Tieu, Michael, Torkelson, Amy, Trinh, Jessica, Tung, Herman, Wakeman, Wayne, Ward, Katelyn, Williams, Grace, Zhou, Zhi, Ting, Jonathan T., Arkhipov, Anton, Sümbül, Uygar, Lein, Ed S., Koch, Christof, Yao, Zizhen, Tasic, Bosiljka, Berg, Jim, Murphy, Gabe J., Zeng, Hongkui

“…Neurons are frequently classified into distinct types on the basis of structural, physiological, or genetic attributes. To better constrain the definition of…”
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Nucleation process of a fibril precursor in the C-terminal segment of amyloid-β by Baftizadeh, Fahimeh, Pietrucci, Fabio, Biarnés, Xevi, Laio, Alessandro

“…By extended atomistic simulations in explicit solvent and bias-exchange metadynamics, we study the aggregation process of 18 chains of the C-terminal segment…”
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Joint inference of discrete cell types and continuous type-specific variability in single-cell datasets with MMIDAS by Marghi, Yeganeh, Gala, Rohan, Baftizadeh, Fahimeh, Sümbül, Uygar

“…Reproducible definition and identification of cell types is essential to enable investigations into their biological function and to understand their relevance…”
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Publisher Correction: Joint inference of discrete cell types and continuous type-specific variability in single-cell datasets with MMIDAS by Marghi, Yeganeh, Gala, Rohan, Baftizadeh, Fahimeh, Sümbül, Uygar

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Angle-Directed Nucleation of Paracetamol on Biocompatible Nanoimprinted Polymers by Stojaković, Jelena, Baftizadeh, Fahimeh, Bellucci, Michael A., Myerson, Allan S., Trout, Bernhardt L.

“…Nucleation kinetics of small-molecule organics can be directed by heterogeneous surfaces imprinted with angular nanopatterns. In this work, we utilized…”
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Experimental and Mechanistic Study of the Heterogeneous Nucleation and Epitaxy of Acetaminophen with Biocompatible Crystalline Substrates by Wijethunga, Tharanga K, Baftizadeh, Fahimeh, Stojaković, Jelena, Myerson, Allan S, Trout, Bernhardt L

“…The presence of different heterogeneous surfaces can directly influence the nucleation kinetics, crystal growth, and morphology of active pharmaceutical…”
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fMRI single trial discovery of spatio‐temporal brain activity patterns by Allegra, Michele, Seyed‐Allaei, Shima, Pizzagalli, Fabrizio, Baftizadeh, Fahimeh, Maieron, Marta, Reverberi, Carlo, Laio, Alessandro, Amati, Daniele

“…There is growing interest in the description of short‐lived patterns in the spatiotemporal cortical activity monitored via neuroimaging. Most traditional…”
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Consistent cross-modal identification of cortical neurons with coupled autoencoders by Gala, Rohan, Budzillo, Agata, Baftizadeh, Fahimeh, Miller, Jeremy, Gouwens, Nathan, Arkhipov, Anton, Murphy, Gabe, Tasic, Bosiljka, Zeng, Hongkui, Hawrylycz, Michael, Sümbül, Uygar

“…Consistent identification of neurons in different experimental modalities is a key problem in neuroscience. Although methods to perform multimodal measurements…”
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Thermodynamics of an Intrinsically Disordered Protein by Atomistic Simulations by Granata, Daniele, Baftizadeh Baghal, Fahimeh, Camilloni, Carlo, Vendruscolo, Michele, Laio, Alessandro

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Simulation of Amyloid Nucleation with Bias-Exchange Metadynamics by Baftizadeh Baghal, Fahimeh, Biarnes, Xevi, Pietrucci, Fabio, Laio, Alessandro, Affinito, Fabio

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