Search Results - "BRINKROLF, Karina"

Curare and GenExVis: a versatile toolkit for analyzing and visualizing RNA-Seq data by Blumenkamp, Patrick, Pfister, Max, Diedrich, Sonja, Brinkrolf, Karina, Jaenicke, Sebastian, Goesmann, Alexander

“…Even though high-throughput transcriptome sequencing is routinely performed in many laboratories, computational analysis of such data remains a cumbersome…”
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Cottonseed Press Cake as a Potential Diet for Industrially Farmed Black Soldier Fly Larvae Triggers Adaptations of Their Bacterial and Fungal Gut Microbiota by Tegtmeier, Dorothee, Hurka, Sabine, Klüber, Patrick, Brinkrolf, Karina, Heise, Philipp, Vilcinskas, Andreas

“…Black soldier fly larvae ( , Diptera: Stratiomyidae) are used for the bioconversion of organic side products into valuable compounds such as proteins, lipids…”
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A reference genome of the Chinese hamster based on a hybrid assembly strategy by Rupp, Oliver, MacDonald, Madolyn L., Li, Shangzhong, Dhiman, Heena, Polson, Shawn, Griep, Sven, Heffner, Kelley, Hernandez, Inmaculada, Brinkrolf, Karina, Jadhav, Vaibhav, Samoudi, Mojtaba, Hao, Haiping, Kingham, Brewster, Goesmann, Alexander, Betenbaugh, Michael J., Lewis, Nathan E., Borth, Nicole, Lee, Kelvin H.

“…Accurate and complete genome sequences are essential in biotechnology to facilitate genome‐based cell engineering efforts. The current genome assemblies for…”
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Integrative analysis of DNA methylation and gene expression in butyrate-treated CHO cells by Wippermann, Anna, Rupp, Oliver, Brinkrolf, Karina, Hoffrogge, Raimund, Noll, Thomas

“…•DNA methylation and gene expression in butyrate-treated CHO cells were analyzed.•Butyrate affected e.g. cell cycle, energy metabolism and protein…”
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Bioactivity Profiling of In Silico Predicted Linear Toxins from the Ants Myrmica rubra and Myrmica ruginodis by Hurka, Sabine, Lüddecke, Tim, Paas, Anne, Dersch, Ludwig, Schulte, Lennart, Eichberg, Johanna, Hardes, Kornelia, Brinkrolf, Karina, Vilcinskas, Andreas

“…The venoms of ants (Formicidae) are a promising source of novel bioactive molecules with potential for clinical and agricultural applications. However, despite…”
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High-quality genome sequence of Pichia pastoris CBS7435 by Küberl, Andreas, Schneider, Jessica, Thallinger, Gerhard G., Anderl, Ingund, Wibberg, Daniel, Hajek, Tanja, Jaenicke, Sebastian, Brinkrolf, Karina, Goesmann, Alexander, Szczepanowski, Rafael, Pühler, Alfred, Schwab, Helmut, Glieder, Anton, Pichler, Harald

“…The methylotrophic yeast Pichia pastoris ( Komagataella phaffii) CBS7435 is the parental strain of commonly used P. pastoris recombinant protein production…”
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Construction of a public CHO cell line transcript database using versatile bioinformatics analysis pipelines by Rupp, Oliver, Becker, Jennifer, Brinkrolf, Karina, Timmermann, Christina, Borth, Nicole, Pühler, Alfred, Noll, Thomas, Goesmann, Alexander

“…Chinese hamster ovary (CHO) cell lines represent the most commonly used mammalian expression system for the production of therapeutic proteins. In this…”
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Genomic analysis of novel Yarrowia-like yeast symbionts associated with the carrion-feeding burying beetle Nicrophorus vespilloides by Brinkrolf, Karina, Shukla, Shantanu P, Griep, Sven, Rupp, Oliver, Heise, Philipp, Goesmann, Alexander, Heckel, David G, Vogel, Heiko, Vilcinskas, Andreas

“…Mutualistic interactions with microbes can help insects adapt to extreme environments and unusual diets. An intriguing example is the burying beetle…”
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Venomics of the Central European Myrmicine Ants Myrmica rubra and Myrmica ruginodis by Hurka, Sabine, Brinkrolf, Karina, Özbek, Rabia, Förster, Frank, Billion, André, Heep, John, Timm, Thomas, Lochnit, Günter, Vilcinskas, Andreas, Lüddecke, Tim

“…Animal venoms are a rich source of novel biomolecules with potential applications in medicine and agriculture. Ants are one of the most species-rich lineages…”
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Unraveling the Chinese hamster ovary cell line transcriptome by next-generation sequencing by Becker, Jennifer, Hackl, Matthias, Rupp, Oliver, Jakobi, Tobias, Schneider, Jessica, Szczepanowski, Rafael, Bekel, Thomas, Borth, Nicole, Goesmann, Alexander, Grillari, Johannes, Kaltschmidt, Christian, Noll, Thomas, Pühler, Alfred, Tauch, Andreas, Brinkrolf, Karina

“…► We sequenced the CHO cell line transcriptome with pyrosequencing technology from 454 Life Sciences generating sequence reads of ≈400 bp. ► These long reads…”
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Next-generation sequencing of the Chinese hamster ovary microRNA transcriptome: Identification, annotation and profiling of microRNAs as targets for cellular engineering by Hackl, Matthias, Jakobi, Tobias, Blom, Jochen, Doppmeier, Daniel, Brinkrolf, Karina, Szczepanowski, Rafael, Bernhart, Stephan H., Siederdissen, Christian Höner zu, Bort, Juan A. Hernandez, Wieser, Matthias, Kunert, Renate, Jeffs, Simon, Hofacker, Ivo L., Goesmann, Alexander, Pühler, Alfred, Borth, Nicole, Grillari, Johannes

“…Chinese hamster ovary (CHO) cells are the predominant cell factory for the production of recombinant therapeutic proteins. Nevertheless, the lack in publicly…”
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Larvae of the Clothing Moth Tineola bisselliella Maintain Gut Bacteria that Secrete Enzyme Cocktails to Facilitate the Digestion of Keratin by Vilcinskas, Andreas, Schwabe, Michael, Brinkrolf, Karina, Plarre, Rudy, Wielsch, Natalie, Vogel, Heiko

“…The evolutionary success of insects is promoted by their association with beneficial microbes that enable the utilization of unusual diets. The synanthropic…”
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The structure of the Cyberlindnera jadinii genome and its relation to Candida utilis analyzed by the occurrence of single nucleotide polymorphisms by Rupp, Oliver, Brinkrolf, Karina, Buerth, Christoph, Kunigo, Maya, Schneider, Jessica, Jaenicke, Sebastian, Goesmann, Alexander, Pühler, Alfred, Jaeger, Karl-Erich, Ernst, Joachim F.

“…•We established the 12.7Mb draft genome sequence of Cyberlindnera jadinii.•An automated annotation of the genome identified 6.147 protein-coding sequences.•The…”
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Draft Genome Sequence of Turicella otitidis ATCC 51513, Isolated from Middle Ear Fluid from a Child with Otitis Media by BRINKROLF, Karina, SCHNEIDER, Jessica, KNECHT, Marina, RÜCKERT, Christian, TAUCH, Andreas

“…Article Usage Stats Services JB Citing Articles Google Scholar PubMed Related Content Social Bookmarking CiteULike Delicious Digg Facebook Google+ Mendeley…”
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The individual and common repertoire of DNA-binding transcriptional regulators of Corynebacterium glutamicum, Corynebacterium efficiens, Corynebacterium diphtheriae and Corynebacterium jeikeium deduced from the complete genome sequences by Brune, Iris, Brinkrolf, Karina, Kalinowski, Jörn, Pühler, Alfred, Tauch, Andreas

“…The genus Corynebacterium includes Gram-positive microorganisms of great biotechnologically importance, such as Corynebacterium glutamicum and Corynebacterium…”
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The lifestyle of Corynebacterium urealyticum derived from its complete genome sequence established by pyrosequencing by Tauch, Andreas, Trost, Eva, Tilker, Alexandra, Ludewig, Ulrike, Schneiker, Susanne, Goesmann, Alexander, Arnold, Walter, Bekel, Thomas, Brinkrolf, Karina, Brune, Iris, Götker, Susanne, Kalinowski, Jörn, Kamp, Paul-Bertram, Lobo, Francisco Pereira, Viehoever, Prisca, Weisshaar, Bernd, Soriano, Francisco, Dröge, Marcus, Pühler, Alfred

“…Corynebacterium urealyticum is a lipid-requiring, urealytic bacterium of the human skin flora that has been recognized as causative agent of urinary tract…”
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Draft Genome Sequence of Wickerhamomyces ciferrii NRRL Y-1031 F-60-10 by Schneider, Jessica, Andrea, Heiko, Blom, Jochen, Jaenicke, Sebastian, Rückert, Christian, Schorsch, Christoph, Szczepanowski, Rafael, Farwick, Mike, Goesmann, Alexander, Pühler, Alfred, Schaffer, Steffen, Tauch, Andreas, Köhler, Tim, Brinkrolf, Karina

“…Classifications Services EC Citing Articles Google Scholar PubMed Related Content Social Bookmarking CiteULike Delicious Digg Facebook Google+ Mendeley Reddit…”
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Characterization of the LacI-type transcriptional repressor RbsR controlling ribose transport in Corynebacterium glutamicum ATCC 13032 by Nentwich, Svenja S, Brinkrolf, Karina, Gaigalat, Lars, Huser, Andrea T, Rey, Daniel A, Mohrbach, Tobias, Marin, Kay, Puhler, Alfred, Tauch, Andreas, Kalinowski, Jorn

“…1 Institut für Genomforschung und Systembiologie, Centrum für Biotechnologie, Universität Bielefeld, Universitätsstrasse 27, 33615 Bielefeld, Germany 2…”
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CoryneRegNet: an ontology-based data warehouse of corynebacterial transcription factors and regulatory networks by Baumbach, Jan, Brinkrolf, Karina, Czaja, Lisa F, Rahmann, Sven, Tauch, Andreas

“…The application of DNA microarray technology in post-genomic analysis of bacterial genome sequences has allowed the generation of huge amounts of data related…”
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The IclR-Type Transcriptional Repressor LtbR Regulates the Expression of Leucine and Tryptophan Biosynthesis Genes in the Amino Acid Producer Corynebacterium glutamicum by Brune, Iris, Jochmann, Nina, Brinkrolf, Karina, Hüser, Andrea T, Gerstmeir, Robert, Eikmanns, Bernhard J, Kalinowski, Jörn, Pühler, Alfred, Tauch, Andreas

“…Article Usage Stats Services JB Citing Articles Google Scholar PubMed Related Content Social Bookmarking CiteULike Delicious Digg Facebook Google+ Mendeley…”
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