Search Results - "BERMAN, M H"

The Protein Data Bank by Berman, H M, Westbrook, J, Feng, Z, Gilliland, G, Bhat, T N, Weissig, H, Shindyalov, I N, Bourne, P E

“…The Protein Data Bank (PDB; http://www.rcsb.org/pdb/ ) is the single worldwide archive of structural data of biological macromolecules. This paper describes…”
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A standard reference frame for the description of nucleic acid base-pair geometry by Olson, W K, Bansal, M, Burley, S K, Dickerson, R E, Gerstein, M, Harvey, S C, Heinemann, U, Lu, X J, Neidle, S, Shakked, Z, Sklenar, H, Suzuki, M, Tung, C S, Westhof, E, Wolberger, C, Berman, H M

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Crystal and Molecular Structure of a Collagen-Like Peptide at 1.9 Å Resolution by Bella, Jordi, Eaton, Mark, Brodsky, Barbara, Berman, Helen M.

“…The structure of a protein triple helix has been determined at 1.9 angstrom resolution by x-ray crystallographic studies of a collagen-like peptide containing…”
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Hydration of the DNA bases is local by Schneider, B., Berman, H.M.

“…Ordered hydration sites were determined for the nucleotide bases in B-type conformations using the crystal structure data on 14 B-DNA decamer structures. A…”
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The nucleic acid database. A comprehensive relational database of three-dimensional structures of nucleic acids by Berman, H.M., Olson, W.K., Beveridge, D.L., Westbrook, J., Gelbin, A., Demeny, T., Hsieh, S.H., Srinivasan, A.R., Schneider, B.

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Sequence dependent conformational variations of collagen triple-helical structure by Berman, Helen M, Kramer, Rachel Z, Bella, Jordi, Mayville, Patricia, Brodsky, Barbara

“…The 2 A crystal structure reported here of the collagen-like model peptide, T3-785, provides the first visualization of how the sequence of collagen defines…”
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A systematic method for studying the spatial distribution of water molecules around nucleic acid bases by Schneider, B., Cohen, D.M., Schleifer, L., Srinivasan, A.R., Olson, W.K., Berman, H.M.

“…A new method to analyze the distribution of water molecules around the bases in DNA is presented. This method relies on the notion of a "hydrated building…”
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The protein structure initiative structural genomics knowledgebase by Berman, Helen M., Westbrook, John D., Gabanyi, Margaret J., Tao, Wendy, Shah, Raship, Kouranov, Andrei, Schwede, Torsten, Arnold, Konstantin, Kiefer, Florian, Bordoli, Lorenza, Kopp, Jürgen, Podvinec, Michael, Adams, Paul D., Carter, Lester G., Minor, Wladek, Nair, Rajesh, Baer, Joshua La

“…The Protein Structure Initiative Structural Genomics Knowledgebase (PSI SGKB, http://kb.psi-structuralgenomics.org) has been created to turn the products of…”
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The Protein Data Bank and structural genomics by Westbrook, John, Feng, Zukang, Chen, Li, Yang, Huanwang, Berman, Helen M.

“…The Protein Data Bank (PDB; http://www.pdb.org/) continues to be actively involved in various aspects of the informatics of structural genomics…”
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Analysis of local helix bending in crystal structures of DNA oligonucleotides and DNA-protein complexes by Young, M.A., Ravishanker, G., Beveridge, D.L., Berman, H.M.

“…Sequence-dependent bending of the helical axes in 112 oligonucleotide duplex crystal structures resident in the Nucleic Acid Database have been analyzed and…”
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Catabolite activator protein: DNA binding and transcription activation by Lawson, Catherine L, Swigon, David, Murakami, Katsuhiko S, Darst, Seth A, Berman, Helen M, Ebright, Richard H

“…Recently determined structures of the Escherichia coli catabolite activator protein (CAP) in complex with DNA, and in complex with the RNA polymerase α subunit…”
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The RCSB Protein Data Bank: a redesigned query system and relational database based on the mmCIF schema by Deshpande, Nita, Addess, Kenneth J., Bluhm, Wolfgang F., Merino-Ott, Jeffrey C., Townsend-Merino, Wayne, Zhang, Qing, Knezevich, Charlie, Xie, Lie, Chen, Li, Feng, Zukang, Kramer Green, Rachel, Flippen-Anderson, Judith L., Westbrook, John, Berman, Helen M., Bourne, Philip E.

“…The Protein Data Bank (PDB) is the central worldwide repository for three-dimensional (3D) structure data of biological macromolecules. The Research…”
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Hydration of DNA bases: analysis of crystallographic data by Schneider, B, Cohen, D, Berman, H M

“…We present a systematic analysis of water structure around nucleic acid bases. We have examined 28 crystal structures of oligonucleotides, and have studied the…”
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Protein-RNA interactions: a structural analysis by Jones, S, Daley, D T, Luscombe, N M, Berman, H M, Thornton, J M

“…A detailed computational analysis of 32 protein-RNA complexes is presented. A number of physical and chemical properties of the intermolecular interfaces are…”
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Importance of tetrahydrofolate and ATP in the anaerobic O-demethylation reaction for phenylmethylethers by BERMAN, M. H, FRAZER, A. C

“…Classifications Services AEM Citing Articles Google Scholar PubMed Related Content Social Bookmarking CiteULike Delicious Digg Facebook Google+ Mendeley Reddit…”
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The Protein Data Bank and the challenge of structural genomics by Berman, H M, Bhat, T N, Bourne, P E, Feng, Z, Gilliland, G, Weissig, H, Westbrook, J

“…The PDB has created systems for the processing, exchange, query, and distribution of data that will enable many aspects of high throughput structural genomics…”
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Using electrostatic potentials to predict DNA‐binding sites on DNA‐binding proteins by Jones, Susan, Shanahan, Hugh P., Berman, Helen M., Thornton, Janet M.

“…A method to detect DNA‐binding sites on the surface of a protein structure is important for functional annotation. This work describes the analysis of residue…”
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Protein-DNA interactions: a structural analysis by Jones, Susan, van Heyningen, Paul, Berman, Helen M., Thornton, Janet M.

“…A detailed analysis of the DNA-binding sites of 26 proteins is presented using data from the Nucleic Acid Database (NDB) and the Protein Data Bank (PDB)…”
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The crystal and molecular structure of a collagen-like peptide with A biologically relevant sequence by Kramer, Rachel Z, Bella, Jordi, Brodsky, Barbara, Berman, Helen M

“…A detailed description of the 2.0 Å structure of the triple-helical peptide, (Pro-Hyp-Gly) 3-Ile-Thr-Gly-Ala-Arg-Gly-Leu-Ala-Gly-Pro-Hyp-Gly-(Pro-Hyp-Gly) 3,…”
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How can dentists and parents communicate effectively about children's dental health needs? by Berman, M H

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