Search Results - "Aury, Jean Marc"

Adaptive introgression as a driver of local adaptation to climate in European white oaks by Leroy, Thibault, Louvet, Jean-Marc, Lalanne, Céline, Le Provost, Grégoire, Labadie, Karine, Aury, Jean-Marc, Delzon, Sylvain, Plomion, Christophe, Kremer, Antoine

“…• Latitudinal and elevational gradients provide valuable experimental settings for studies of the potential impact of global warming on forest tree species…”
Get full text

Extensive recent secondary contacts between four European white oak species by Leroy, Thibault, Roux, Camille, Villate, Laure, Bodénès, Catherine, Romiguier, Jonathan, Paiva, Jorge A P, Dossat, Carole, Aury, Jean-Marc, Plomion, Christophe, Kremer, Antoine

“…Historical trajectories of tree species during the late Quaternary have been well reconstructed through genetic and palaeobotanical studies. However, many…”
Get full text

De Novo Assembly of a New Solanum pennellii Accession Using Nanopore Sequencing by Schmidt, Maximilian H.-W., Vogel, Alexander, Denton, Alisandra K., Istace, Benjamin, Wormit, Alexandra, van de Geest, Henri, Bolger, Marie E., Alseekh, Saleh, Maß, Janina, Pfaff, Christian, Schurr, Ulrich, Chetelat, Roger, Maumus, Florian, Aury, Jean-Marc, Koren, Sergey, Fernie, Alisdair R., Zamir, Dani, Bolger, Anthony M., Usadel, Björn

“…Updates in nanopore technology have made it possible to obtain gigabases of sequence data. Prior to this, nanopore sequencing technology was mainly used to…”
Get full text

Massive postglacial gene flow between European white oaks uncovered genes underlying species barriers by Leroy, Thibault, Rougemont, Quentin, Dupouey, Jean-Luc, Bodénès, Catherine, Lalanne, Céline, Belser, Caroline, Labadie, Karine, Le Provost, Grégoire, Aury, Jean-Marc, Kremer, Antoine, Plomion, Christophe

“…• Oaks are dominant forest tree species widely distributed across the Northern Hemisphere, where they constitute natural resources of economic, ecological,…”
Get full text

Transposition favors the generation of large effect mutations that may facilitate rapid adaption by Quadrana, Leandro, Etcheverry, Mathilde, Gilly, Arthur, Caillieux, Erwann, Madoui, Mohammed-Amin, Guy, Julie, Bortolini Silveira, Amanda, Engelen, Stefan, Baillet, Victoire, Wincker, Patrick, Aury, Jean-Marc, Colot, Vincent

“…Transposable elements (TEs) are mobile parasitic sequences that have been repeatedly coopted during evolution to generate new functions and rewire gene…”
Get full text

Mapping the Epigenetic Basis of Complex Traits by Cortijo, Sandra, Wardenaar, René, Colomé-Tatché, Maria, Gilly, Arthur, Etcheverry, Mathilde, Labadie, Karine, Caillieux, Erwann, Hospital, Fréderic, Aury, Jean-Marc, Wincker, Patrick, Roudier, François, Jansen, Ritsert C., Colot, Vincent, Johannes, Frank

“…Quantifying the impact of heritable epigenetic variation on complex traits is an emerging challenge in population genetics. Here, we analyze a population of…”
Get full text

Transcriptome profiling of mouse samples using nanopore sequencing of cDNA and RNA molecules by Sessegolo, Camille, Cruaud, Corinne, Da Silva, Corinne, Cologne, Audric, Dubarry, Marion, Derrien, Thomas, Lacroix, Vincent, Aury, Jean-Marc

“…Our vision of DNA transcription and splicing has changed dramatically with the introduction of short-read sequencing. These high-throughput sequencing…”
Get full text

Interspecific introgression patterns reveal the origins of worldwide cultivated bananas in New Guinea by Martin, Guillaume, Cottin, Aurélien, Baurens, Franc‐Christophe, Labadie, Karine, Hervouet, Catherine, Salmon, Frédéric, Paulo‐de‐la‐Reberdiere, Nilda, Van den Houwe, Ines, Sardos, Julie, Aury, Jean‐Marc, D'Hont, Angélique, Yahiaoui, Nabila

“…SUMMARY Hybridizations between Musa species and subspecies, enabled by their transport via human migration, were proposed to have played an important role in…”
Get full text

The coffee genome provides insight into the convergent evolution of caffeine biosynthesis by Denoeud, France, Carretero-Paulet, Lorenzo, Dereeper, Alexis, Droc, Gaëtan, Guyot, Romain, Pietrella, Marco, Zheng, Chunfang, Alberti, Adriana, Anthony, François, Aprea, Giuseppe, Aury, Jean-Marc, Bento, Pascal, Bernard, Maria, Bocs, Stéphanie, Campa, Claudine, Cenci, Alberto, Combes, Marie-Christine, Crouzillat, Dominique, Da Silva, Corinne, Daddiego, Loretta, De Bellis, Fabien, Dussert, Stéphane, Garsmeur, Olivier, Gayraud, Thomas, Guignon, Valentin, Jahn, Katharina, Jamilloux, Véronique, Joët, Thierry, Labadie, Karine, Lan, Tianying, Leclercq, Julie, Lepelley, Maud, Leroy, Thierry, Li, Lei-Ting, Librado, Pablo, Lopez, Loredana, Muñoz, Adriana, Noel, Benjamin, Pallavicini, Alberto, Perrotta, Gaetano, Poncet, Valérie, Pot, David, Priyono, Rigoreau, Michel, Rouard, Mathieu, Rozas, Julio, Tranchant-Dubreuil, Christine, VanBuren, Robert, Zhang, Qiong, Andrade, Alan C., Argout, Xavier, Bertrand, Benoît, de Kochko, Alexandre, Graziosi, Giorgio, Henry, Robert J, Jayarama, Ming, Ray, Nagai, Chifumi, Rounsley, Steve, Sankoff, David, Giuliano, Giovanni, Albert, Victor A., Wincker, Patrick, Lashermes, Philippe

“…Coffee is a valuable beverage crop due to its characteristic flavor, aroma, and the stimulating effects of caffeine. We generated a high-quality draft genome…”
Get full text

Structural and functional partitioning of bread wheat chromosome 3B by Choulet, Frédéric, Alberti, Adriana, Theil, Sébastien, Glover, Natasha, Barbe, Valérie, Daron, Josquin, Pingault, Lise, Sourdille, Pierre, Couloux, Arnaud, Paux, Etienne, Leroy, Philippe, Mangenot, Sophie, Guilhot, Nicolas, Le Gouis, Jacques, Balfourier, Francois, Alaux, Michael, Jamilloux, Véronique, Poulain, Julie, Durand, Céline, Bellec, Arnaud, Gaspin, Christine, Safar, Jan, Dolezel, Jaroslav, Rogers, Jane, Vandepoele, Klaas, Aury, Jean-Marc, Mayer, Klaus, Berges, Hélène, Quesneville, Hadi, Wincker, Patrick, Feuillet, Catherine

“…We produced a reference sequence of the 1-gigabase chromosome 3B of hexaploid bread wheat. By sequencing 8452 bacterial artificial chromosomes in pools, we…”
Get full text

BoardION: real-time monitoring of Oxford Nanopore sequencing instruments by Bruno, Aimeric, Aury, Jean-Marc, Engelen, Stefan

“…One of the main advantages of the Oxford Nanopore Technology (ONT) is the possibility of real-time sequencing. This gives access to information during the…”
Get full text

Tracking population structure and phenology through time using ancient genomes from waterlogged white oak wood by Wagner, Stefanie, Seguin‐Orlando, Andaine, Leplé, Jean‐Charles, Leroy, Thibault, Lalanne, Céline, Labadie, Karine, Aury, Jean‐Marc, Poirier, Sandy, Wincker, Patrick, Plomion, Christophe, Kremer, Antoine, Orlando, Ludovic

“…Whole genome characterizations of crop plants based on ancient DNA have provided unique keys for a better understanding of the evolutionary origins of modern…”
Get full text

Functional diversity of microbial eukaryotes in a meromictic lake: Coupling between metatranscriptomic and a trait‐based approach by Monjot, Arthur, Bronner, Gisèle, Courtine, Damien, Cruaud, Corinne, Da Silva, Corinne, Aury, Jean‐Marc, Gavory, Frederick, Moné, Anne, Vellet, Agnès, Wawrzyniak, Ivan, Colombet, Jonathan, Billard, Hermine, Debroas, Didier, Lepère, Cécile

“…The advent of high‐throughput sequencing has led to the discovery of a considerable diversity of microbial eukaryotes in aquatic ecosystems, nevertheless,…”
Get full text

Epigenomic and structural events preclude recombination in Brassica napus by Boideau, Franz, Richard, Gautier, Coriton, Olivier, Huteau, Virginie, Belser, Caroline, Deniot, Gwenaelle, Eber, Frédérique, Falentin, Cyril, Ferreira de Carvalho, Julie, Gilet, Marie, Lodé‐Taburel, Maryse, Maillet, Loeiz, Morice, Jérôme, Trotoux, Gwenn, Aury, Jean‐Marc, Chèvre, Anne‐Marie, Rousseau‐Gueutin, Mathieu

“…Summary Meiotic recombination is a major evolutionary process generating genetic diversity at each generation in sexual organisms. However, this process is…”
Get full text

Telomere-to-telomere gapless chromosomes of banana using nanopore sequencing by Belser, Caroline, Baurens, Franc-Christophe, Noel, Benjamin, Martin, Guillaume, Cruaud, Corinne, Istace, Benjamin, Yahiaoui, Nabila, Labadie, Karine, Hřibová, Eva, Doležel, Jaroslav, Lemainque, Arnaud, Wincker, Patrick, D’Hont, Angélique, Aury, Jean-Marc

“…Long-read technologies hold the promise to obtain more complete genome assemblies and to make them easier. Coupled with long-range technologies, they can…”
Get full text

Improvement of the banana "Musa acuminata" reference sequence using NGS data and semi-automated bioinformatics methods by Martin, Guillaume, Baurens, Franc-Christophe, Droc, Gaëtan, Rouard, Mathieu, Cenci, Alberto, Kilian, Andrzej, Hastie, Alex, Doležel, Jaroslav, Aury, Jean-Marc, Alberti, Adriana, Carreel, Françoise, D'Hont, Angélique

“…Recent advances in genomics indicate functional significance of a majority of genome sequences and their long range interactions. As a detailed examination of…”
Get full text

Hybridization and polyploidy enable genomic plasticity without sex in the most devastating plant-parasitic nematodes by Blanc-Mathieu, Romain, Perfus-Barbeoch, Laetitia, Aury, Jean-Marc, Da Rocha, Martine, Gouzy, Jérôme, Sallet, Erika, Martin-Jimenez, Cristina, Bailly-Bechet, Marc, Castagnone-Sereno, Philippe, Flot, Jean-François, Kozlowski, Djampa K, Cazareth, Julie, Couloux, Arnaud, Da Silva, Corinne, Guy, Julie, Kim-Jo, Yu-Jin, Rancurel, Corinne, Schiex, Thomas, Abad, Pierre, Wincker, Patrick, Danchin, Etienne G J

“…Root-knot nematodes (genus Meloidogyne) exhibit a diversity of reproductive modes ranging from obligatory sexual to fully asexual reproduction. Intriguingly,…”
Get full text

Chromosome-scale assemblies of plant genomes using nanopore long reads and optical maps by Belser, Caroline, Istace, Benjamin, Denis, Erwan, Dubarry, Marion, Baurens, Franc-Christophe, Falentin, Cyril, Genete, Mathieu, Berrabah, Wahiba, Chèvre, Anne-Marie, Delourme, Régine, Deniot, Gwenaëlle, Denoeud, France, Duffé, Philippe, Engelen, Stefan, Lemainque, Arnaud, Manzanares-Dauleux, Maria, Martin, Guillaume, Morice, Jérôme, Noel, Benjamin, Vekemans, Xavier, D’Hont, Angélique, Rousseau-Gueutin, Mathieu, Barbe, Valérie, Cruaud, Corinne, Wincker, Patrick, Aury, Jean-Marc

“…Plant genomes are often characterized by a high level of repetitiveness and polyploid nature. Consequently, creating genome assemblies for plant genomes is…”
Get full text

Estimation of contemporary effective population size in plant populations: Limitations of genomic datasets by Gargiulo, Roberta, Decroocq, Véronique, González‐Martínez, Santiago C., Paz‐Vinas, Ivan, Aury, Jean‐Marc, Lesur Kupin, Isabelle, Plomion, Christophe, Schmitt, Sylvain, Scotti, Ivan, Heuertz, Myriam

“…Effective population size (Ne) is a pivotal evolutionary parameter with crucial implications in conservation practice and policy. Genetic methods to estimate…”
Get full text

The complete chloroplast genome of banana (Musa acuminata, Zingiberales): insight into plastid monocotyledon evolution by Martin, Guillaume, Baurens, Franc-Christophe, Cardi, Céline, Aury, Jean-Marc, D'Hont, Angélique

“…Banana (genus Musa) is a crop of major economic importance worldwide. It is a monocotyledonous member of the Zingiberales, a sister group of the widely studied…”
Get full text