Search Results - "Atkinson, Joshua"

Inter-kingdom electromechanical communication by Atkinson, Joshua T.

“…The field of engineered living materials (ELMs) involves incorporating cells into materials to enable new functionalities. Now, ELMs have been developed that…”
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Real-time bioelectronic sensing of environmental contaminants by Atkinson, Joshua T., Su, Lin, Zhang, Xu, Bennett, George N., Silberg, Jonathan J., Ajo-Franklin, Caroline M.

“…Real-time chemical sensing is crucial for applications in environmental and health monitoring 1 . Biosensors can detect a variety of molecules through genetic…”
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Dissipative Assembly of Macrocycles Comprising Multiple Transient Bonds by Hossain, Mohammad Mosharraf, Atkinson, Joshua L., Hartley, C. Scott

“…Dissipative assembly has great potential for the creation of new adaptive chemical systems. However, while molecular assembly at equilibrium is routinely used…”
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The Biochemical Impact of Extracting an Embedded Adenylate Kinase Domain Using Circular Permutation by Coleman, Tom, Shin, John, Silberg, Jonathan J., Shamoo, Yousif, Atkinson, Joshua T.

“…Adenylate kinases (AKs) have evolved AMP-binding and lid domains that are encoded as continuous polypeptides embedded at different locations within the…”
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Cellular Assays for Ferredoxins: A Strategy for Understanding Electron Flow through Protein Carriers That Link Metabolic Pathways by Atkinson, Joshua T, Campbell, Ian, Bennett, George N, Silberg, Jonathan J

“…The ferredoxin (Fd) protein family is a structurally diverse group of iron–sulfur proteins that function as electron carriers, linking biochemical pathways…”
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Solution‐Deposited and Patternable Conductive Polymer Thin‐Film Electrodes for Microbial Bioelectronics by Tseng, Chia‐Ping, Liu, Fangxin, Zhang, Xu, Huang, Po‐Chun, Campbell, Ian, Li, Yilin, Atkinson, Joshua T., Terlier, Tanguy, Ajo‐Franklin, Caroline M., Silberg, Jonathan J., Verduzco, Rafael

“…Microbial bioelectronic devices integrate naturally occurring or synthetically engineered electroactive microbes with microelectronics. These devices have a…”
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Circular permutation profiling by deep sequencing libraries created using transposon mutagenesis by Atkinson, Joshua T, Jones, Alicia M, Zhou, Quan, Silberg, Jonathan J

“…Abstract Deep mutational scanning has been used to create high-resolution DNA sequence maps that illustrate the functional consequences of large numbers of…”
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Determinants of Multiheme Cytochrome Extracellular Electron Transfer Uncovered by Systematic Peptide Insertion by Campbell, Ian J., Atkinson, Joshua T., Carpenter, Matthew D., Myerscough, Dru, Su, Lin, Ajo-Franklin, Caroline M., Silberg, Jonathan J.

“…The multiheme cytochrome MtrA enables microbial respiration by transferring electrons across the outer membrane to extracellular electron acceptors. While…”
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Protein tolerance to random circular permutation correlates with thermostability and local energetics of residue-residue contacts by Atkinson, Joshua T, Jones, Alicia M, Nanda, Vikas, Silberg, Jonathan J

“…Adenylate kinase (AK) orthologs with a range of thermostabilities were subjected to random circular permutation, and deep mutational scanning was used to…”
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Metalloprotein switches that display chemical-dependent electron transfer in cells by Atkinson, Joshua T., Campbell, Ian J., Thomas, Emily E., Bonitatibus, Sheila C., Elliott, Sean J., Bennett, George N., Silberg, Jonathan J.

“…Biological electron transfer is challenging to directly regulate using environmental conditions. To enable dynamic, protein-level control over energy flow in…”
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Combinatorial design of chemical‐dependent protein switches for controlling intracellular electron transfer by Wu, Bingyan, Atkinson, Joshua T., Kahanda, Dimithree, Bennett, George N., Silberg, Jonathan J.

“…One challenge with controlling electron flow in cells is the lack of biomolecules that directly couple environmental sensing to electron transfer efficiency…”
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Overcoming component limitations in synthetic biology through transposon-mediated protein engineering by Atkinson, Joshua T, Wu, Bingyan, Segatori, Laura, Silberg, Jonathan J

“…Protein fission and fusion can be used to create biomolecules with new structures and functions, including circularly permuted proteins that require…”
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The energetics and evolution of oxidoreductases in deep time by McGuinness, Kenneth N., Fehon, Nolan, Feehan, Ryan, Miller, Michelle, Mutter, Andrew C., Rybak, Laryssa A., Nam, Justin, AbuSalim, Jenna E., Atkinson, Joshua T., Heidari, Hirbod, Losada, Natalie, Kim, J. Dongun, Koder, Ronald L., Lu, Yi, Silberg, Jonathan J., Slusky, Joanna S. G., Falkowski, Paul G., Nanda, Vikas

“…The core metabolic reactions of life drive electrons through a class of redox protein enzymes, the oxidoreductases. The energetics of electron flow is…”
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Museums as Places: Two review cases and a transdisciplinary perspective by GJOCI, Nina, ATKINSON, Joshua D

“…In this essay, we theorize the differences and similarities between rhetorical and cultural geographic approaches to the study of one example of a memory…”
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Introduction to Engineering Biology: A Conceptual Framework for Teaching Synthetic Biology by Sheets, Michael B., Atkinson, Joshua T., Styczynski, Mark P., Aurand, Emily R.

“…As the impacts of engineering biology grow, it is important to introduce the field early and in an accessible way. However, teaching engineering biology poses…”
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Living electronics: A catalogue of engineered living electronic components by Atkinson, Joshua T., Chavez, Marko S., Niman, Christina M., El‐Naggar, Mohamed Y.

“…Biology leverages a range of electrical phenomena to extract and store energy, control molecular reactions and enable multicellular communication. Microbes, in…”
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Life simplified: recompiling a bacterial genome for synonymous codon compression by Atkinson, Joshua T

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Prochlorococcus phage ferredoxin: structural characterization and electron transfer to cyanobacterial sulfite reductases by Campbell, Ian J., Olmos, Jose Luis, Xu, Weijun, Kahanda, Dimithree, Atkinson, Joshua T., Sparks, Othneil Noble, Miller, Mitchell D., Phillips, George N., Bennett, George N., Silberg, Jonathan J.

“…Marine cyanobacteria are infected by phages whose genomes encode ferredoxin (Fd) electron carriers. These Fds are thought to redirect the energy harvested from…”
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A Split Methyl Halide Transferase AND Gate That Reports by Synthesizing an Indicator Gas by Fulk, Emily M, Huh, Dongkuk, Atkinson, Joshua T, Lie, Margaret, Masiello, Caroline A, Silberg, Jonathan J

“…Monitoring microbial reactions in highly opaque or autofluorescent environments like soils, seawater, and wastewater remains challenging. To develop a simple…”
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A Zebrafish Model of Retinitis Pigmentosa Shows Continuous Degeneration and Regeneration of Rod Photoreceptors by Santhanam, Abirami, Shihabeddin, Eyad, Atkinson, Joshua A., Nguyen, Duc, Lin, Ya-Ping, O’Brien, John

“…More than 1.5 million people suffer from Retinitis Pigmentosa, with many experiencing partial to complete vision loss. Regenerative therapies offer some hope,…”
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