Search Results - "Atilgan, R."

Computational approaches for deciphering the equilibrium and kinetic properties of iron transport proteins by Abdizadeh, H, Atilgan, A. R, Atilgan, C, Dedeoglu, B

“…With the advances in three-dimensional structure determination techniques, high quality structures of the iron transport proteins transferrin and the bacterial…”
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Manipulation of Conformational Change in Proteins by Single-Residue Perturbations by Atilgan, C., Gerek, Z.N., Ozkan, S.B., Atilgan, A.R.

“…Using the perturbation-response scanning (PRS) technique, we study a set of 25 proteins that display a variety of conformational motions upon ligand binding…”
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Anisotropy of Fluctuation Dynamics of Proteins with an Elastic Network Model by Atilgan, A.R., Durell, S.R., Jernigan, R.L., Demirel, M.C., Keskin, O., Bahar, I.

“…Fluctuations about the native conformation of proteins have proven to be suitably reproduced with a simple elastic network model, which has shown excellent…”
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Microbial Safety and Shelf Life of UV-C Treated Freshly Squeezed White Grape Juice by Unluturk, Sevcan, Atilgan, Mehmet R.

“…The effects of UV‐C irradiation on the inactivation of Escherichia coli K‐12 (ATCC 25253), a surrogate of E. coli O157:H7, and on the shelf life of freshly…”
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Depth dependent dynamics in the hydration shell of a protein by Servantie, J, Atilgan, C, Atilgan, A R

“…We study the dynamics of hydration water/protein association in folded proteins using lysozyme and myoglobin as examples. Extensive molecular dynamics…”
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Investigation of short- and long-term effects of ovarian hyperstimulation syndrome on ovarian reserve: an experimental study by Pala, S, Atilgan, R, Ozkan, Z S, Akpolat, N, Ilhan, N, Sapmaz, E

“…To investigate the short and long-term effects of ovarian hyperstimulation syndrome (OHSS) on serum levels of vascular endothelial growth factor (VEGF) and…”
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Effect of fibrin glue and comparison with suture on experimental induction of endometriosis in a rat endometrial autograft model by Boztosun, A, Ozer, H, Atilgan, R, Açmaz, G, Yalta, T, Müderris, I I, Yanik, A

“…The effects of fibrin glue (FG) and suture were investigated and compared with experimental induction in an endometriosis model. A randomized, controlled, and…”
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Use of UV-C radiation as a non-thermal process for liquid egg products (LEP) by Unluturk, Sevcan, Atılgan, Mehmet R., Handan Baysal, A., Tarı, Canan

“…The efficacy of short wave ultraviolet light (UV-C) as a non-thermal process for liquid egg products (LEP) was investigated. Non-pathogenic Escherichia coli…”
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Identification of kinetically hot residues in proteins by Demirel, Melik C., Atilgan, Ali Rana, Bahar, Ivet, Jernigan, Robert L., Erman, Burak

“…A number of recent studies called attention to the presence of kinetically important residues underlying the formation and stabilization of folding nuclei in…”
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Molecular Dynamics Analysis of Coupling between Librational Motions and Isomeric Jumps in Chain Molecules by Baysal, Canan, Atilgan, Ali R, Erman, Burak, Bahar, İvet

“…The coupling between librational motions and rotational isomeric jumps in polymers is investigated. Librations originate from bond stretching, bond angle…”
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Modeling inactivation kinetics of liquid egg white exposed to UV-C irradiation by Unluturk, Sevcan, Atılgan, Mehmet R., Baysal, A. Handan, Unluturk, Mehmet S.

“…The efficiency of UV-C irradiation as a non-thermal pasteurization process for liquid egg white (LEW) was investigated. LEW inoculated with Escherichia coli…”
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Collective Motions in HIV-1 Reverse Transcriptase: Examination of Flexibility and Enzyme Function by Bahar, Ivet, Erman, Burak, Jernigan, Robert L., Atilgan, Ali Rana, Covell, David G.

“…In order to study the inferences of structure for mechanism, the collective motions of the retroviral reverse transcriptase HIV-1 RT (RT) are examined using…”
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Examination of the effect of ovarian radiation injury induced by hysterosalpingography on ovarian proliferating cell nuclear antigen and the radioprotective effect of amifostine: an experimental study by Can, Behzat, Atilgan, Remzi, Pala, Sehmus, Kuloğlu, Tuncay, Kiray, Sule, Ilhan, Nevin

“…The aim of this study was to examine the effect of amifostine on cellular injury in the ovarian tissue induced by hysterosalpingography (HSG). In total, forty…”
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State-space prediction model for chaotic time series by Alparslan, A. K., Sayar, M., Atilgan, A. R.

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DYNAMICS OF DISORDERED STRUCTURES: EFFECT OF NON-LINEARITY ON THE LOCALIZATION by Sayar, M., Demirel, M.C., Atilgan, A.R.

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Direct evaluation of thermal fluctuations in proteins using a single-parameter harmonic potential by Bahar, Ivet, Atilgan, Ali Rana, Erman, Burak

“…Background: An elastic network model is proposed for the interactions between closely (≤ 7.0 Å) located α-carbon pairs in folded proteins. A single-parameter…”
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SPACE-TIME MIXED FINITE ELEMENTS FOR RODS by Atilgan, A.R., Hodges, D.H., Özbek, M.A., Zhou, W.

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Protective effects of vitamin C and vitamin E against hysterosalpingography-induced epithelial degeneration and proliferation in rat endometrium by Pala, Şehmus, Atilgan, Remzi, Kuloğlu, Tuncay, Kara, Murat, Başpinar, Melike, Can, Behzat, Artaş, Gökhan

“…The aim of this study was to examine the protective effects of vitamin C (VC) and vitamin E (VE) against hysterosalpingography (HSG)-induced epithelial…”
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A Nonlinear Model for the Kinking Behavior of Unidirectional Polymer Matrix Composites by Atilgan, Ali Rana

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Effect of varying doses of tamoxifen on ovarian histopathology, serum VEGF, and endothelin 1 levels in ovarian hyperstimulation syndrome: anexperimental study by Pala S, Atilgan R, Ozkan ZS, Kavak SB, Ilhan N, Akpolat N, Sapmaz E

“…Sehmus Pala,1 Remzi Atilgan,1 Zehra Sema Ozkan,1 Salih Burçin Kavak,1 Nevin Ilhan,2 Nusret Akpolat,3 Ekrem Sapmaz1 1Department of Obstetrics and Gynecology,…”
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