Search Results - "Assad, Nima"

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  1. 1

    Baryon number and lepton universality violation in leptoquark and diquark models by Assad, Nima, Fornal, Bartosz, Grinstein, Benjamín

    Published in Physics letters. B (01-02-2018)
    “…We perform a systematic study of models involving leptoquarks and diquarks with masses well below the grand unification scale and demonstrate that a large…”
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    Journal Article
  2. 2

    Altering the Double-Stranded DNA Specificity of the bZIP Domain of Zta with Site-Directed Mutagenesis at N182 by Ray, Sreejana, Tillo, Desiree, Assad, Nima, Ufot, Aniekanabasi, Porollo, Aleksey, Durell, Stewart R, Vinson, Charles

    Published in ACS omega (11-01-2022)
    “…Zta, the Epstein–Barr virus bZIP transcription factor (TF), binds both unmethylated and methylated double-stranded DNA (dsDNA) in a sequence-specific manner…”
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    Journal Article
  3. 3

    GABPα and CREB1 Binding to Double Nucleotide Polymorphisms of Their Consensus Motifs and Cooperative Binding to the Composite ETS ⇔ CRE Motif (ACCGGAAGTGACGTCA) by Assad, Nima, Tillo, Desiree, Ray, Sreejana, Dzienny, Alexa, FitzGerald, Peter C, Vinson, Charles

    Published in ACS omega (30-06-2019)
    “…Previously, cooperative binding of the bZIP domain of CREB1 and the ETS domain of GABPα was observed for the composite DNA ETS ⇔ CRE motif (A 0 C 1 C 2 G 3 G 4…”
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    Journal Article
  4. 4
  5. 5

    bZIP Dimers CREB1, ATF2, Zta, ATF3|cJun, and cFos|cJun Prefer to Bind to Some Double-Stranded DNA Sequences Containing 5‑Formylcytosine and 5‑Carboxylcytosine by Ray, Sreejana, Tillo, Desiree, Ufot, Aniekanabasi, Assad, Nima, Durell, Stewart, Vinson, Charles

    Published in Biochemistry (Easton) (29-09-2020)
    “…In mammalian cells, 5-methylcytosine (5mC) occurs in genomic double-stranded DNA (dsDNA) and is enzymatically oxidized to 5-hydroxymethylcytosine (5hmC), then…”
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    Journal Article
  6. 6

    Custom DNA Microarrays Reveal Diverse Binding Preferences of Proteins and Small Molecules to Thousands of G‑Quadruplexes by Ray, Sreejana, Tillo, Desiree, Boer, Robert E, Assad, Nima, Barshai, Mira, Wu, Guanhui, Orenstein, Yaron, Yang, Danzhou, Schneekloth, John S, Vinson, Charles

    Published in ACS chemical biology (17-04-2020)
    “…Single-stranded DNA (ssDNA) containing four guanine repeats can form G-quadruplex (G4) structures. While cellular proteins and small molecules can bind G4s, it…”
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  7. 7

    The bZIP mutant CEBPB (V285A) has sequence specific DNA binding propensities similar to CREB1 by Ray, Sreejana, Ufot, Aniekanabasi, Assad, Nima, Singh, Jocelyn, Durell, Stewart R., Porollo, Aleksey, Tillo, Desiree, Vinson, Charles

    “…The bZIP homodimers CEBPB and CREB1 bind DNA containing methylated cytosines differently. CREB1 binds stronger to the C/EBP half-site GCAA when the cytosine is…”
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    Journal Article
  8. 8

    Development of a machine learning model to identify elbow implants from radiographic images by Henson, Philip, Assad, Nima, Cho, Brian, Schwartz, John T., Geng, Eric, Arvind, Varun, Cho, Samuel K., Kim, Jun S.

    Published in Seminars in arthroplasty (01-06-2023)
    “…Total elbow arthroplasty rates continue to rise year after year with up to 7.6% annual growth, yet complication and failure rates have been reported as high as…”
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  9. 9

    The Epstein-Barr Virus B‑ZIP Protein Zta Recognizes Specific DNA Sequences Containing 5‑Methylcytosine and 5‑Hydroxymethylcytosine by Tillo, Desiree, Ray, Sreejana, Syed, Khund-Sayeed, Gaylor, Mary Rose, He, Ximiao, Wang, Jun, Assad, Nima, Durell, Stewart R, Porollo, Aleksey, Weirauch, Matthew T, Vinson, Charles

    Published in Biochemistry (Easton) (28-11-2017)
    “…The Epstein-Barr virus (EBV) B-ZIP transcription factor Zta binds to many DNA sequences containing methylated CG dinucleotides. Using protein binding…”
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    Journal Article
  10. 10

    Abstract 3611: Determining the regulation and role of mreg DC in tumor immunity by Mattiuz, Raphael, Assad, Nima, Hamon, Pauline, Magen, Assaf, Berichel, Jessica Le, Merad, Miriam

    Published in Cancer research (Chicago, Ill.) (15-06-2022)
    “…Abstract Therapeutic immunity against tumors is mainly determined by effector T cells. However, T cells are educated by antigen presenting cells, particularly…”
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  11. 11

    Replacing C189 in the bZIP domain of Zta with S, T, V, or A changes DNA binding specificity to four types of double-stranded DNA by Ray, Sreejana, Tillo, Desiree, Assad, Nima, Ufot, Aniekanabasi, Deppmann, Christopher, Durell, Stewart R., Porollo, Aleksey, Vinson, Charles

    “…Zta is a bZIP transcription factor (TF) in the Epstein-Barr virus that binds unmethylated and methylated DNA sequences. Substitution of cysteine 189 of Zta to…”
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    Journal Article
  12. 12
  13. 13

    Baryon Number and Lepton Universality Violation in Leptoquark and Diquark Models by Assad, Nima, Fornal, Bartosz, Grinstein, Benjamin

    Published 24-11-2017
    “…Phys. Lett. B777 (2018) 324-331 We perform a systematic study of models involving leptoquarks and diquarks with masses well below the grand unification scale…”
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    Journal Article