Search Results - "Artzi, Shay"
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miRviewer: a multispecies microRNA homologous viewer
Published in BMC research notes (13-02-2012)“…MicroRNAs (miRNAs) are short non-coding RNAs that regulate gene expression via binding to the 3' ends of mRNAs. MiRNAs have been associated with many cellular…”
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miRNAminer: a tool for homologous microRNA gene search
Published in BMC bioinformatics (23-01-2008)“…MicroRNAs (miRNAs), present in most metazoans, are small non-coding RNAs that control gene expression by negatively regulating translation through binding to…”
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Structure of ubiquitylated-Rpn10 provides insight into its autoregulation mechanism
Published in Nature communications (04-10-2016)“…Ubiquitin receptors decode ubiquitin signals into many cellular responses. Ubiquitin receptors also undergo coupled monoubiquitylation, and rapid…”
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A framework for automated testing of javascript web applications
Published in 2011 33rd International Conference on Software Engineering (ICSE) (21-05-2011)“…Current practice in testing JavaScript web applications requires manual construction of test cases, which is difficult and tedious. We present a framework for…”
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In vivo and in vitro tracking of erosion in biodegradable materials using non-invasive fluorescence imaging
Published in Nature materials (01-09-2011)“…In vitro experiments of a biomaterial's degradability rarely predict its in vivo behaviour. It is now shown that tracking the hydrolytic and enzymatic erosion…”
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A bacterial genetic selection system for ubiquitylation cascade discovery
Published in Nature methods (01-11-2016)“…An Escherichia coli -based genetic selection system, constructed from a split antibiotic resistance protein individually tethered to ubiquitin and a target…”
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Finding Bugs in Web Applications Using Dynamic Test Generation and Explicit-State Model Checking
Published in IEEE transactions on software engineering (01-07-2010)“…Web script crashes and malformed dynamically generated webpages are common errors, and they seriously impact the usability of Web applications. Current tools…”
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Fault Localization for Dynamic Web Applications
Published in IEEE transactions on software engineering (01-03-2012)“…In recent years, there has been significant interest in fault-localization techniques that are based on statistical analysis of program constructs executed by…”
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Structure-based in silico identification of ubiquitin-binding domains provides insights into the ALIX-V:ubiquitin complex and retrovirus budding
Published in The EMBO journal (20-02-2013)“…The ubiquitylation signal promotes trafficking of endogenous and retroviral transmembrane proteins. The signal is decoded by a large set of ubiquitin (Ub)…”
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Automated repair of HTML generation errors in PHP applications using string constraint solving
Published in 2012 34th International Conference on Software Engineering (ICSE) (01-06-2012)“…PHP web applications routinely generate invalid HTML. Modern browsers silently correct HTML errors, but sometimes malformed pages render inconsistently, cause…”
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Conference Proceeding -
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Erratum: In vivo and in vitro tracking of erosion in biodegradable materials using non-invasive fluorescence imaging
Published in Nature materials (01-11-2011)“…Nature Materials 10, 704–709 (2011); published online: 24 October 2011; corrected after print: 20 September 2011. In the version of this Letter originally…”
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Practical fault localization for dynamic web applications
Published in 2010 ACM/IEEE 32nd International Conference on Software Engineering (01-05-2010)“…We leverage combined concrete and symbolic execution and several fault-localization techniques to create a uniquely powerful tool for localizing faults in PHP…”
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Conference Proceeding -
13
In vivo and in vitro tracking of erosion in biodegradable materials using non-invasive fluorescence imaging
Published in Nature materials (01-11-2011)“…The design of erodible biomaterials relies on the ability to program the in vivo retention time, which necessitates real-time monitoring of erosion. However,…”
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14
Parameter reference immutability: formal definition, inference tool, and comparison
Published in Automated software engineering (01-03-2009)“…Knowing which method parameters may be mutated during a method’s execution is useful for many software engineering tasks. A parameter reference is immutable if…”
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