Search Results - "Arnott, Alicia"

Epidemiologic Evidence for Airborne Transmission of SARS-CoV-2 during Church Singing, Australia, 2020 by Katelaris, Anthea L, Wells, Jessica, Clark, Penelope, Norton, Sophie, Rockett, Rebecca, Arnott, Alicia, Sintchenko, Vitali, Corbett, Stephen, Bag, Shopna K

“…An outbreak of severe acute respiratory syndrome coronavirus 2 infection occurred among church attendees after an infectious chorister sang at multiple…”
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Revealing COVID-19 transmission in Australia by SARS-CoV-2 genome sequencing and agent-based modeling by Rockett, Rebecca J., Arnott, Alicia, Lam, Connie, Sadsad, Rosemarie, Timms, Verlaine, Gray, Karen-Ann, Eden, John-Sebastian, Chang, Sheryl, Gall, Mailie, Draper, Jenny, Sim, Eby M., Bachmann, Nathan L., Carter, Ian, Basile, Kerri, Byun, Roy, O’Sullivan, Matthew V., Chen, Sharon C-A, Maddocks, Susan, Sorrell, Tania C., Dwyer, Dominic E., Holmes, Edward C., Kok, Jen, Prokopenko, Mikhail, Sintchenko, Vitali

“…In January 2020, a novel betacoronavirus (family Coronaviridae ), named severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2), was identified as the…”
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Co-infection with SARS-CoV-2 Omicron and Delta variants revealed by genomic surveillance by Rockett, Rebecca J., Draper, Jenny, Gall, Mailie, Sim, Eby M., Arnott, Alicia, Agius, Jessica E., Johnson-Mackinnon, Jessica, Fong, Winkie, Martinez, Elena, Drew, Alexander P., Lee, Clement, Ngo, Christine, Ramsperger, Marc, Ginn, Andrew N., Wang, Qinning, Fennell, Michael, Ko, Danny, Hueston, Linda, Kairaitis, Lukas, Holmes, Edward C., O’Sullivan, Matthew N., Chen, Sharon C.-A., Kok, Jen, Dwyer, Dominic E., Sintchenko, Vitali

“…Co-infections with different variants of SARS-CoV-2 are a key precursor to recombination events that are likely to drive SARS-CoV-2 evolution. Rapid…”
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Understanding the population genetics of Plasmodium vivax is essential for malaria control and elimination by Arnott, Alicia, Barry, Alyssa E, Reeder, John C

“…Traditionally, infection with Plasmodium vivax was thought to be benign and self-limiting, however, recent evidence has demonstrated that infection with P…”
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Multidrug-Resistant Salmonella enterica 4,[5],12:i:- Sequence Type 34, New South Wales, Australia, 2016-2017 by Arnott, Alicia, Wang, Qinning, Bachmann, Nathan, Sadsad, Rosemarie, Biswas, Chayanika, Sotomayor, Cristina, Howard, Peter, Rockett, Rebecca, Wiklendt, Agnieszka, Iredell, Jon R, Sintchenko, Vitali

“…Multidrug- and colistin-resistant Salmonella enterica serotype 4,[5],12:i:- sequence type 34 is present in Europe and Asia. Using genomic surveillance, we…”
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Tracking the international spread of SARS-CoV-2 lineages B.1.1.7 and B.1.351/501Y-V2 by O'Toole, Áine, Hill, Verity, Pybus, Oliver G., Watts, Alexander, Bogoch, Issac I., Khan, Kamran, Messina, Jane P., Tegally, Houriiyah, Lessells, Richard R., Giandhari, Jennifer, Pillay, Sureshnee, Tumedi, Kefentse Arnold, Nyepetsi, Gape, Kebabonye, Malebogo, Matsheka, Maitshwarelo, Mine, Madisa, Tokajian, Sima, Hassan, Hamad, Salloum, Tamara, Merhi, Georgi, Koweyes, Jad, Geoghegan, Jemma L., de Ligt, Joep, Ren, Xiaoyun, Storey, Matthew, Freed, Nikki E., Pattabiraman, Chitra, Prasad, Pramada, Desai, Anita S., Vasanthapuram, Ravi, Schulz, Thomas F., Steinbrück, Lars, Stadler, Tanja, Parisi, Antonio, Bianco, Angelica, García de Viedma, Darío, Buenestado-Serrano, Sergio, Borges, Vítor, Isidro, Joana, Duarte, Sílvia, Gomes, João Paulo, Zuckerman, Neta S., Mandelboim, Michal, Mor, Orna, Seemann, Torsten, Arnott, Alicia, Draper, Jenny, Gall, Mailie, Rawlinson, William, Deveson, Ira, Schlebusch, Sanmarié, McMahon, Jamie, Leong, Lex, Lim, Chuan Kok, Chironna, Maria, Loconsole, Daniela, Bal, Antonin, Josset, Laurence, Holmes, Edward, St. George, Kirsten, Lasek-Nesselquist, Erica, Sikkema, Reina S., Oude Munnink, Bas, Koopmans, Marion, Brytting, Mia, Sudha rani, V., Pavani, S., Smura, Teemu, Heim, Albert, Kurkela, Satu, Umair, Massab, Salman, Muhammad, Bartolini, Barbara, Rueca, Martina, Drosten, Christian, Wolff, Thorsten, Silander, Olin, Eggink, Dirk, Reusken, Chantal, Vennema, Harry, Park, Aekyung, Carrington, Christine, Sahadeo, Nikita, Carr, Michael, Gonzalez, Gabo, de Oliveira, Tulio, Faria, Nuno, Rambaut, Andrew, Kraemer, Moritz U. G.

“…Late in 2020, two genetically-distinct clusters of severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2) with mutations of biological concern were…”
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Vibrio parahaemolyticus Foodborne Illness Associated with Oysters, Australia, 2021-2022 by Fearnley, Emily, Leong, Lex E X, Centofanti, Alessia, Dowsett, Paul, Combs, Barry G, Draper, Anthony D K, Hocking, Helen, Howden, Ben, Horan, Kristy, Wilmot, Mathilda, Levy, Avram, Cooley, Louise A, Kennedy, Karina J, Wang, Qinning, Arnott, Alicia, Graham, Rikki M A, Sinchenko, Vitali, Jennison, Amy V, Kane, Stacey, Wright, Rose

“…The bacterium Vibrio parahaemolyticus is ubiquitous in tropical and temperate waters throughout the world and causes infections in humans resulting from water…”
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Novel Salmonella enterica Serovar Typhimurium Genotype Levels as Herald of Seasonal Salmonellosis Epidemics by Sotomayor, Cristina, Wang, Qinning, Arnott, Alicia, Howard, Peter, Hope, Kirsty, Lan, Ruiting, Sintchenko, Vitali

“…We examined the population dynamics of Salmonella enterica serovar Typhimurium during seasonal salmonellosis epidemics in New South Wales, Australia, during…”
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Risk factors leading to COVID‐19 cases in a Sydney restaurant by Capon, Adam, Houston, Jody, Rockett, Rebecca, Sheppeard, Vicky, Chaverot, Sandra, Arnott, Alicia, Parashko, Tiana, Ferson, Mark

“…To explore the factors associated with the transmission of SARS‐CoV‐2 to patrons of a restaurant. A retrospective cohort design was undertaken, with spatial…”
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A Study of the Genetic Variability of Human Respiratory Syncytial Virus (HRSV) in Cambodia Reveals the Existence of a New HRSV Group B Genotype by ARNOTT, Alicia, VONG, Sirenda, ASGARI, Nima, FRUTOS, Roger, GUILLARD, Bertrand, TOUCH, Sok, DEUBEL, Vincent, BUCHY, Philippe, MARDY, Sek, SIMON CHU, NAUGHTIN, Monica, SOVANN, Ly, BUECHER, Carole, BEAUTE, Julien, RITH, Sareth, BORAND, Laurence

“…Article Usage Stats Services JCM Citing Articles Google Scholar PubMed Related Content Social Bookmarking CiteULike Delicious Digg Facebook Google+ Mendeley…”
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Genome-wide networks reveal emergence of epidemic strains of Salmonella Enteritidis by Svahn, Adam J., Chang, Sheryl L., Rockett, Rebecca J., Cliff, Oliver M., Wang, Qinning, Arnott, Alicia, Ramsperger, Marc, Sorrell, Tania C., Sintchenko, Vitali, Prokopenko, Mikhail

“…•Investigated whole-genome network analysis to complement phylogenetic analysis•Covered Salmonella enterica serovar enteritidis isolates over 2015-2019•Covered…”
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Plasmodium vivax populations are more genetically diverse and less structured than sympatric Plasmodium falciparum populations by Jennison, Charlie, Arnott, Alicia, Tessier, Natacha, Tavul, Livingstone, Koepfli, Cristian, Felger, Ingrid, Siba, Peter M, Reeder, John C, Bahlo, Melanie, Mueller, Ivo, Barry, Alyssa E

“…The human malaria parasite, Plasmodium vivax, is proving more difficult to control and eliminate than Plasmodium falciparum in areas of co-transmission…”
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Emergent Omicron BR.2.1 sublineage of SARS-CoV-2 in New South Wales, Australia: a subvariant with high fitness but without increased disease severity by Howard-Jones, Annaleise R, Arnott, Alicia, Draper, Jenny, Gall, Mailie, Ellis, Sally, Marris, Kelsi, Selvey, Christine, Basile, Kerri, Dwyer, Dominic E, Sintchenko, Vitali, Kok, Jen

“…•BR.2.1 emerged locally within New South Wales, Australia, in September 2022.•By late November 2022, BR-2 became the predominant SARS-CoV-2 variant in New…”
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SARS-CoV-2 Within-Host and in vitro Genomic Variability and Sub-Genomic RNA Levels Indicate Differences in Viral Expression Between Clinical Cohorts and in vitro Culture by Agius, Jessica E, Johnson-Mackinnon, Jessica C, Fong, Winkie, Gall, Mailie, Lam, Connie, Basile, Kerri, Kok, Jen, Arnott, Alicia, Sintchenko, Vitali, Rockett, Rebecca J

“…Low frequency intrahost single nucleotide variants (iSNVs) of Severe Acute Respiratory Syndrome Coronavirus 2 (SARS-CoV-2) have been increasingly recognised as…”
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Structurally conserved erythrocyte-binding domain in Plasmodium provides a versatile scaffold for alternate receptor engagement by Gruszczyk, Jakub, Lim, Nicholas T. Y., Arnott, Alicia, He, Wen-Qiang, Nguitragool, Wang, Roobsoong, Wanlapa, Mok, Yee-Foong, Murphy, James M., Smith, Katherine R., Lee, Stuart, Bahlo, Melanie, Mueller, Ivo, Barry, Alyssa E., Tham, Wai-Hong

“…Understanding how malaria parasites gain entry into human red blood cells is essential for developing strategies to stop blood stage infection. Plasmodium…”
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SABRes: in silico detection of drug resistance conferring mutations in subpopulations of SARS-CoV-2 genomes by Fong, Winkie, Rockett, Rebecca J, Agius, Jessica E, Chandra, Shona, Johnson-Mckinnon, Jessica, Sim, Eby, Lam, Connie, Arnott, Alicia, Gall, Mailie, Draper, Jenny, Maddocks, Susan, Chen, Sharon, Kok, Jen, Dwyer, Dominic, O'Sullivan, Matthew, Sintchenko, Vitali

“…The emergence of resistance to antiviral drugs increasingly used to treat SARS-CoV-2 infections has been recognised as a significant threat to COVID-19…”
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Added Value of Genomic Surveillance of Virulence Factors in Shiga Toxin-Producing Escherichia coli in New South Wales, Australia by Sim, Eby M, Kim, Ryan, Gall, Mailie, Arnott, Alicia, Howard, Peter, Valcanis, Mary, Howden, Benjamin P, Sintchenko, Vitali

“…The disease caused by Shiga toxin-producing (STEC) remains a significant public health challenge globally, but the incidence of human STEC infections in…”
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Documenting elimination of co-circulating COVID-19 clusters using genomics in New South Wales, Australia by Arnott, Alicia, Draper, Jenny, Rockett, Rebecca J, Lam, Connie, Sadsad, Rosemarie, Gall, Mailie, Martinez, Elena, Byun, Roy, Musto, Jennie, Marais, Ben, Chen, Sharon C.-A, Kok, Jen, Dwyer, Dominic E, Sintchenko, Vitali

“…Abstract Objective To adapt ‘fishplots’ to describe real-time evolution of SARS-CoV-2 genomic clusters. Results This novel analysis adapted the fishplot to…”
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Global Population Structure of the Genes Encoding the Malaria Vaccine Candidate, Plasmodium vivax Apical Membrane Antigen 1 (PvAMA1) by Arnott, Alicia, Mueller, Ivo, Ramsland, Paul A, Siba, Peter M, Reeder, John C, Barry, Alyssa E

“…The Plasmodium vivax Apical Membrane Antigen 1 (PvAMA1) is a promising malaria vaccine candidate, however it remains unclear which regions are naturally…”
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Improved Neutralisation of the SARS-CoV-2 Omicron Variant following a Booster Dose of Pfizer-BioNTech (BNT162b2) COVID-19 Vaccine by Basile, Kerri, Rockett, Rebecca J, McPhie, Kenneth, Fennell, Michael, Johnson-Mackinnon, Jessica, Agius, Jessica E, Fong, Winkie, Rahman, Hossinur, Ko, Danny, Donavan, Linda, Hueston, Linda, Lam, Connie, Arnott, Alicia, Chen, Sharon C.-A, Maddocks, Susan, O’Sullivan, Matthew V, Dwyer, Dominic E, Sintchenko, Vitali, Kok, Jen

“…In late November 2021, the World Health Organization declared the SARS-CoV-2 lineage B.1.1.529 the fifth variant of concern, Omicron. This variant has acquired…”
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