Search Results - "Arjunan, Satya N V"

A Computational Framework for Bioimaging Simulation by Watabe, Masaki, Arjunan, Satya N V, Fukushima, Seiya, Iwamoto, Kazunari, Kozuka, Jun, Matsuoka, Satomi, Shindo, Yuki, Ueda, Masahiro, Takahashi, Koichi

“…Using bioimaging technology, biologists have attempted to identify and document analytical interpretations that underlie biological phenomena in biological…”
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An evolutionary firefly algorithm for the estimation of nonlinear biological model parameters by Abdullah, Afnizanfaizal, Deris, Safaai, Anwar, Sohail, Arjunan, Satya N V

“…The development of accurate computational models of biological processes is fundamental to computational systems biology. These models are usually represented…”
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Surface reaction-diffusion kinetics on lattice at the microscopic scale by Chew, Wei-Xiang, Kaizu, Kazunari, Watabe, Masaki, Muniandy, Sithi V, Takahashi, Koichi, Arjunan, Satya N V

“…Microscopic models of reaction-diffusion processes on the cell membrane can link local spatiotemporal effects to macroscopic self-organized patterns often…”
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pSpatiocyte: a high-performance simulator for intracellular reaction-diffusion systems by Arjunan, Satya N V, Miyauchi, Atsushi, Iwamoto, Kazunari, Takahashi, Koichi

“…Studies using quantitative experimental methods have shown that intracellular spatial distribution of molecules plays a central role in many cellular systems…”
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Multi-Algorithm Particle Simulations with Spatiocyte by Arjunan, Satya N V, Takahashi, Koichi

“…As quantitative biologists get more measurements of spatially regulated systems such as cell division and polarization, simulation of reaction and diffusion of…”
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Signaling activations through G-protein-coupled-receptor aggregations by Watabe, Masaki, Yoshimura, Hideaki, Arjunan, Satya N. V, Kaizu, Kazunari, Takahashi, Koichi

“…Phys. Rev. E 102, 032413 (2020) Eukaryotic cells transmit extracellular signal information to cellular interiors through the formation of a ternary complex…”
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Cooperativity transitions driven by higher-order oligomer formations in ligand-induced receptor dimerization by Watabe, Masaki, Arjunan, Satya N. V, Chew, Wei Xiang, Kaizu, Kazunari, Takahashi, Koichi

“…Phys. Rev. E 100, 062407 (2019) While cooperativity in ligand-induced receptor dimerization has been linked with receptor-receptor couplings via minimal…”
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Simulation of live-cell imaging system reveals hidden uncertainties in cooperative binding measurements by Watabe, Masaki, Arjunan, Satya N. V, Chew, Wei Xiang, Kaizu, Kazunari, Takahashi, Koichi

“…1 July 2019 issue of Physical Review E (Vol. 100, No. 1) We propose a computational method to quantitatively evaluate the systematic uncertainties that arise…”
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Surface reaction-diffusion kinetics on lattice at the microscopic scale by Chew, Wei-Xiang, Kaizu, Kazunari, Watabe, Masaki, Muniandy, Sithi V, Takahashi, Koichi, Arjunan, Satya N. V

“…Phys. Rev. E 99, 042411 (2019) Microscopic models of reaction-diffusion processes on the cell membrane can link local spatiotemporal effects to macroscopic…”
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Reaction-diffusion kinetics on lattice at the microscopic scale by Chew, Wei-Xiang, Kaizu, Kazunari, Watabe, Masaki, Muniandy, Sithi V, Takahashi, Koichi, Arjunan, Satya N. V

“…Phys. Rev. E 98, 032418 (2018) Lattice-based stochastic simulators are commonly used to study biological reaction-diffusion processes. Some of these schemes…”
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A computational framework for bioimaging simulation by Watabe, Masaki, Arjunan, Satya N. V, Fukushima, Seiya, Iwamoto, Kazunari, Kozuka, Jun, Matsuoka, Satomi, Shindo, Yuki, Ueda, Masahiro, Takahashi, Koichi

“…Using bioimaging technology, biologists have attempted to identify and document analytical interpretations that underlie biological phenomena in biological…”
Get full text

Cooperativity transitions driven by higher-order oligomer formations in ligand-induced receptor dimerization by Watabe, Masaki, Arjunan, Satya N V, Chew, Wei Xiang, Kaizu, Kazunari, Takahashi, Koichi

“…While cooperativity in ligand-induced receptor dimerization has been linked with receptor-receptor couplings via minimal representations of physical…”
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Targeted Single-cell Isolation of Spontaneously Escaping Live Melanoma Cells for Comparative Transcriptomics by Tearle, Jacqueline L E, Arjunan, Satya N V, Tay, Szun S, Colakoglu, Feyza, Cremasco, James, Golo, Matteo, Biro, Maté

“…Solid cancer cells escape the primary tumor mass by transitioning from an epithelial-like state to an invasive migratory state. As they escape, metastatic…”
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Simulation of live-cell imaging system reveals hidden uncertainties in cooperative binding measurements by Watabe, Masaki, Arjunan, Satya N V, Chew, Wei Xiang, Kaizu, Kazunari, Takahashi, Koichi

“…We propose a computational method to quantitatively evaluate the systematic uncertainties that arise from undetectable sources in biological measurements using…”
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