Search Results - "Arikawa, Koji"

Strain-level profiling of viable microbial community by selective single-cell genome sequencing by Hosokawa, Masahito, Endoh, Taruho, Kamata, Kazuma, Arikawa, Koji, Nishikawa, Yohei, Kogawa, Masato, Saeki, Tatsuya, Yoda, Takuya, Takeyama, Haruko

“…Culture-independent analysis with high-throughput sequencing has been widely used to characterize bacterial communities. However, signals derived from…”
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Uncultured prokaryotic genomes in the spotlight: An examination of publicly available data from metagenomics and single-cell genomics by Arikawa, Koji, Hosokawa, Masahito

“…Owing to the ineffectiveness of traditional culture techniques for the vast majority of microbial species, culture-independent analyses utilizing…”
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Target enrichment of uncultured human oral bacteria with phage-derived molecules found by single-cell genomics by Hosokawa, Masahito, Iwai, Naoya, Arikawa, Koji, Saeki, Tatsuya, Endoh, Taruho, Kamata, Kazuma, Yoda, Takuya, Tsuda, Soichiro, Takeyama, Haruko

“…Advances in culture-independent microbial analysis, such as metagenomics and single-cell genomics, have significantly increased our understanding of microbial…”
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Revealing within-species diversity in uncultured human gut bacteria with single-cell long-read sequencing by Kogawa, Masato, Nishikawa, Yohei, Saeki, Tatsuya, Yoda, Takuya, Arikawa, Koji, Takeyama, Haruko, Hosokawa, Masahito

“…Obtaining complete and accurate bacterial genomes is vital for studying the characteristics of uncultured bacteria. Single-cell genomics is a promising…”
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Time-lapse single-cell transcriptomics reveals modulation of histone H3 for dormancy breaking in fission yeast by Tsuyuzaki, Hayato, Hosokawa, Masahito, Arikawa, Koji, Yoda, Takuya, Okada, Naoyuki, Takeyama, Haruko, Sato, Masamitsu

“…How quiescent cells break dormancy is a key issue in eukaryotic cells including cancer. Fungal spores, for example, remain quiescent for long periods until…”
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Evaluation of the effects of cell-dispensing using an inkjet-based bioprinter on cell integrity by RNA-seq analysis by Yumoto, Masayuki, Hemmi, Natsuko, Sato, Naoki, Kawashima, Yudai, Arikawa, Koji, Ide, Keigo, Hosokawa, Masahito, Seo, Manabu, Takeyama, Haruko

“…Bioprinting technology is expected to be applied in the fields of regenerative medicine and drug discovery. There are several types of bioprinters, especially…”
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Recovery of strain-resolved genomes from human microbiome through an integration framework of single-cell genomics and metagenomics by Arikawa, Koji, Ide, Keigo, Kogawa, Masato, Saeki, Tatsuya, Yoda, Takuya, Endoh, Taruho, Matsuhashi, Ayumi, Takeyama, Haruko, Hosokawa, Masahito

“…Background Obtaining high-quality (HQ) reference genomes from microbial communities is crucial for understanding the phylogeny and function of uncultured…”
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Effective microtissue RNA extraction coupled with Smart-seq2 for reproducible and robust spatial transcriptome analysis by Yamazaki, Miki, Hosokawa, Masahito, Arikawa, Koji, Takahashi, Kiyofumi, Sakanashi, Chikako, Yoda, Takuya, Matsunaga, Hiroko, Takeyama, Haruko

“…Spatial transcriptomics is useful for understanding the molecular organization of a tissue and providing insights into cellular function in a morphological…”
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Reproducible and sensitive micro-tissue RNA sequencing from formalin-fixed paraffin-embedded tissues for spatial gene expression analysis by Matsunaga, Hiroko, Arikawa, Koji, Yamazaki, Miki, Wagatsuma, Ryota, Ide, Keigo, Samuel, Ashok Zachariah, Takamochi, Kazuya, Suzuki, Kenji, Hayashi, Takuo, Hosokawa, Masahito, Kambara, Hideki, Takeyama, Haruko

“…Spatial transcriptome analysis of formalin-fixed paraffin-embedded (FFPE) tissues using RNA-sequencing (RNA-seq) provides interactive information on morphology…”
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Exploring strain diversity of dominant human skin bacterial species using single-cell genome sequencing by Ide, Keigo, Saeki, Tatsuya, Arikawa, Koji, Yoda, Takuya, Endoh, Taruho, Matsuhashi, Ayumi, Takeyama, Haruko, Hosokawa, Masahito

“…To understand the role of the skin commensal bacterial community in skin health and the spread of pathogens, it is crucial to identify genetic differences in…”
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Identification of two cancer stem cell-like populations in triple-negative breast cancer xenografts by Nakayama, Jun, Matsunaga, Hiroko, Arikawa, Koji, Yoda, Takuya, Hosokawa, Masahito, Takeyama, Haruko, Yamamoto, Yusuke, Semba, Kentaro

“…Gene expression analysis at the single-cell level by next-generation sequencing has revealed the existence of clonal dissemination and microheterogeneity in…”
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A single amplified genome catalog reveals the dynamics of mobilome and resistome in the human microbiome by Kawano-Sugaya, Tetsuro, Arikawa, Koji, Saeki, Tatsuya, Endoh, Taruho, Kamata, Kazuma, Matsuhashi, Ayumi, Hosokawa, Masahito

“…The increase in metagenome-assembled genomes (MAGs) has advanced our understanding of the functional characterization and taxonomic assignment within the human…”
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Integrated spatial analysis of gene mutation and gene expression for understanding tumor diversity in formalin-fixed paraffin-embedded lung adenocarcinoma by Yamazaki, Miki, Hosokawa, Masahito, Matsunaga, Hiroko, Arikawa, Koji, Takamochi, Kazuya, Suzuki, Kenji, Hayashi, Takuo, Kambara, Hideki, Takeyama, Haruko

“…A deeper understanding of intratumoral heterogeneity is essential for prognosis prediction or accurate treatment plan decisions in clinical practice. However,…”
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Vertical flow array chips reliably identify cell types from single-cell mRNA sequencing experiments by Shirai, Masataka, Arikawa, Koji, Taniguchi, Kiyomi, Tanabe, Maiko, Sakai, Tomoyuki

“…Single-cell mRNA sequencing offers an unbiased approach to dissecting cell types as functional units in multicellular tissues. However, highly reliable cell…”
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A highly sensitive and accurate gene expression analysis by sequencing (“bead-seq”) for a single cell by Matsunaga, Hiroko, Goto, Mari, Arikawa, Koji, Shirai, Masataka, Tsunoda, Hiroyuki, Huang, Huan, Kambara, Hideki

“…Analyses of gene expressions in single cells are important for understanding detailed biological phenomena. Here, a highly sensitive and accurate method by…”
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Distinctive Regulation of Emotional Behaviors and Fear-Related Gene Expression Responses in Two Extended Amygdala Subnuclei With Similar Molecular Profiles by Ueda, Shuhei, Hosokawa, Masahito, Arikawa, Koji, Takahashi, Kiyofumi, Fujiwara, Mao, Kakita, Manami, Fukada, Taro, Koyama, Hiroaki, Horigane, Shin-Ichiro, Itoi, Keiichi, Kakeyama, Masaki, Matsunaga, Hiroko, Takeyama, Haruko, Bito, Haruhiko, Takemoto-Kimura, Sayaka

“…The central nucleus of the amygdala (CeA) and the lateral division of the bed nucleus of the stria terminalis (BNST) are the two major nuclei of the central…”
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Is Word Order Asymmetry Mathematically Expressible? by Arikawa, Koji

“…The computational procedure for human natural language (CHL) shows an asymmetry in unmarked orders for S, O, and V. Following Lyle Jenkins, it is speculated…”
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Sequential Sensing by TLR2 and Mincle Directs Immature Myeloid Cells to Protect against Invasive Group A Streptococcal Infection in Mice by Matsumura, Takayuki, Ikebe, Tadayoshi, Arikawa, Koji, Hosokawa, Masahito, Aiko, Michio, Iguchi, Aoi, Togashi, Ikuko, Kai, Sayaka, Ohara, Sakiko, Ohara, Naoya, Ohnishi, Makoto, Watanabe, Haruo, Kobayashi, Kazuo, Takeyama, Haruko, Yamasaki, Sho, Takahashi, Yoshimasa, Ato, Manabu

“…Severe invasive group A Streptococcus (GAS) infection evades anti-bacterial immunity by attenuating the cellular components of innate immune responses…”
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Cortical transcriptome analysis after spinal cord injury reveals the regenerative mechanism of central nervous system in CRMP2 knock-in mice by Sugeno, Ayaka, Piao, Wenhui, Yamazaki, Miki, Takahashi, Kiyofumi, Arikawa, Koji, Matsunaga, Hiroko, Hosokawa, Masahito, Tominaga, Daisuke, Goshima, Yoshio, Takeyama, Haruko, Ohshima, Toshio

“…Recent studies have shown that mutation at Ser522 causes inhibition of collapsin response mediator protein 2 (CRMP2) phosphorylation and induces axon…”
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Locality in Syntax and Floating Numeral Quantifiers by Miyagawa, Shigeru, Arikawa, Koji

“…We defend the idea that a floating quantifier observes syntactic locality with its associated noun phrase. This idea has given rise to a number of important…”
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