Search Results - "Appel, Ron D."

Automated protein identification by tandem mass spectrometry: Issues and strategies by Hernandez, Patricia, Müller, Markus, Appel, Ron D.

“…Protein identification by tandem mass spectrometry (MS/MS) is key to most proteomics projects and has been widely explored in bioinformatics research…”
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The World-2DPAGE Constellation to promote and publish gel-based proteomics data through the ExPASy server by Hoogland, Christine, Mostaguir, Khaled, Appel, Ron D., Lisacek, Frédérique

“…Since it was launched in 1993, the ExPASy server has been and is still a reference in the proteomics world. ExPASy users access various databases, many…”
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SWISS-2DPAGE, ten years later by Hoogland, Christine, Mostaguir, Khaled, Sanchez, Jean-Charles, Hochstrasser, Denis F., Appel, Ron D.

“…The SWISS‐2DPAGE database was established in 1993 and is maintained collaboratively by the Swiss Institute of Bioinformatics (SIB) and the Biomedical…”
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ExPASy: the proteomics server for in-depth protein knowledge and analysis by Gasteiger, Elisabeth, Gattiker, Alexandre, Hoogland, Christine, Ivanyi, Ivan, Appel, Ron D., Bairoch, Amos

“…The ExPASy (the Expert Protein Analysis System) World Wide Web server (http://www.expasy.org), is provided as a service to the life science community by a…”
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Proteome informatics I: Bioinformatics tools for processing experimental data by Palagi, Patricia M., Hernandez, Patricia, Walther, Daniel, Appel, Ron D.

“…Bioinformatics tools for proteomics, also called proteome informatics tools, span today a large panel of very diverse applications ranging from simple tools to…”
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Labeling of Bifidobacterium longum Cells with ¹³C-Substituted Leucine for Quantitative Proteomic Analyses by Couté, Yohann, Hernandez, Céline, Appel, Ron D, Sanchez, Jean-Charles, Margolles, Abelardo

“…Stable isotope labeling of amino acids in cell culture was used for Bifidobacterium longum. A comprehensive proteomic strategy was developed and validated by…”
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Guidelines for the next 10 years of proteomics by Wilkins, Marc R., Appel, Ron D., Van Eyk, Jennifer E., Chung, Maxey C. M., Görg, Angelika, Hecker, Michael, Huber, Lukas A., Langen, Hanno, Link, Andrew J., Paik, Young-Ki, Patterson, Scott D., Pennington, Stephen R., Rabilloud, Thierry, Simpson, Richard J., Weiss, Walter, Dunn, Michael J.

“…In the last ten years, the field of proteomics has expanded at a rapid rate. A range of exciting new technology has been developed and enthusiastically applied…”
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Characterization of Protein Cross-Links via Mass Spectrometry and an Open-Modification Search Strategy by Singh, Pragya, Shaffer, Scott A, Scherl, Alexander, Holman, Carol, Pfuetzner, Richard A, Larson Freeman, Theodore J, Miller, Samuel I, Hernandez, Patricia, Appel, Ron D, Goodlett, David R

“…Protein−protein interactions are key to function and regulation of many biological pathways. To facilitate characterization of protein−protein interactions…”
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Accessing Reliable Health Information on the Web: A Review of the HON Approach by Boyer, Célia, Gaudinat, Arnaud, Hanbury, Allan, Appel, Ron D, Ball, Marion J, Carpentier, Michel, van Bemmel, Jan H, Bergmans, Jean-Paul, Hochstrasser, Denis, Lindberg, Donald, Miller, Randolph, Peterschmitt, Jean-Claude, Safran, Charles, Thonnet, Michèle, Geissbühler, Antoine

“…Accessing online health content of high quality and reliability presents challenges. Laypersons cannot easily differentiate trustworthy content from…”
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Fifteen years SIB Swiss Institute of Bioinformatics: life science databases, tools and support by Stockinger, Heinz, Altenhoff, Adrian M, Arnold, Konstantin, Bairoch, Amos, Bastian, Frederic, Bergmann, Sven, Bougueleret, Lydie, Bucher, Philipp, Delorenzi, Mauro, Lane, Lydie, Le Mercier, Philippe, Lisacek, Frédérique, Michielin, Olivier, Palagi, Patricia M, Rougemont, Jacques, Schwede, Torsten, von Mering, Christian, van Nimwegen, Erik, Walther, Daniel, Xenarios, Ioannis, Zavolan, Mihaela, Zdobnov, Evgeny M, Zoete, Vincent, Appel, Ron D

“…The SIB Swiss Institute of Bioinformatics (www.isb-sib.ch) was created in 1998 as an institution to foster excellence in bioinformatics. It is renowned…”
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Visualization and analysis of molecular scanner peptide mass spectra by Müller, Markus, Gras, Robin, Appel, Ron D, Bienvenut, Willy V, Hochstrasser, Denis F

“…The molecular scanner combines protein separation using gel electrophoresis with peptide mass fingerprinting (PMF) techniques to identify proteins in a highly…”
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MSight: An image analysis software for liquid chromatography-mass spectrometry by Palagi, Patricia M., Walther, Daniel, Quadroni, Manfredo, Catherinet, Sébastien, Burgess, Jennifer, Zimmermann-Ivol, Catherine G., Sanchez, Jean-Charles, Binz, Pierre-Alain, Hochstrasser, Denis F., Appel, Ron D.

“…Images obtained from high‐throughput mass spectrometry (MS) contain information that remains hidden when looking at a single spectrum at a time. Image…”
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Proteome informatics II: Bioinformatics for comparative proteomics by Lisacek, Frédérique, Cohen-Boulakia, Sarah, Appel, Ron D.

“…The present review attempts to cover the most recent initiatives directed towards representing, storing, displaying and processing protein‐related data suited…”
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Health On the Net's 20 Years of Transparent and Reliable Health Information by Boyer, Célia, Appel, Ron D, Ball, Marion J, van Bemmel, Jan H, Bergmans, Jean-Paul, Carpentier, Michel, Hochstrasser, Denis, Lindberg, Donald, Miller, Randolph, Peterschmitt, Jean-Claude, Safran, Charlie, Thonnet, Michèle, Geissbühler, Antoine

“…The Health On the Net Foundation (HON) was born in 1996, during the beginning of the World Wide Web, from a collective decision by health specialists, led by…”
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On the Benefits of Acquiring Peptide Fragment Ions at High Measured Mass Accuracy by Scherl, Alexander, Shaffer, Scott A., Taylor, Gregory K., Hernandez, Patricia, Appel, Ron D., Binz, Pierre-Alain, Goodlett, David R.

“…The advantages and disadvantages of acquiring tandem mass spectra by collision-induced dissociation (CID) of peptides in linear ion trap Fourier-transform…”
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Popitam: Towards new heuristic strategies to improve protein identification from tandem mass spectrometry data by Hernandez, Patricia, Gras, Robin, Frey, Julien, Appel, Ron D.

“…In recent years, proteomics research has gained importance due to increasingly powerful techniques in protein purification, mass spectrometry and…”
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SwissPIT: An workflow-based platform for analyzing tandem-MS spectra using the Grid by Quandt, Andreas, Masselot, Alexandre, Hernandez, Patricia, Hernandez, Céline, Maffioletti, Sergio, Appel, Ron D, Lisacek, Frederique

“…The identification and characterization of peptides from MS/MS data represents a critical aspect of proteomics. It has been the subject of extensive research…”
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Creating 2DE databases for the World Wide Web by Hoogl, Christine, Mostaguir, Khaled, Appel, Ron D

“…With the development of the Internet, a growing number of two-dimensional electrophoresis (2DE) databases have become available (60 in 2009, for a total of 425…”
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MIAPEGelDB, a web-based submission tool and public repository for MIAPE gel electrophoresis documents by Robin, Xavier, Hoogland, Christine, Appel, Ron D., Lisacek, Frédérique

“…The HUPO Proteomics Standards Initiative (PSI) defines standards for data representation in proteomics to facilitate data exchange and comparison, and quality…”
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Systems Biology: a loose definition by Lisacek, Frédérique, Appel, Ron D

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