Search Results - "Andermann, Tobias"

CoordinateCleaner: Standardized cleaning of occurrence records from biological collection databases by Zizka, Alexander, Silvestro, Daniele, Andermann, Tobias, Azevedo, Josué, Duarte Ritter, Camila, Edler, Daniel, Farooq, Harith, Herdean, Andrei, Ariza, María, Scharn, Ruud, Svantesson, Sten, Wengström, Niklas, Zizka, Vera, Antonelli, Alexandre, Quental, Tiago

“…Species occurrence records from online databases are an indispensable resource in ecological, biogeographical and palaeontological research. However, issues…”
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Estimating Alpha, Beta, and Gamma Diversity Through Deep Learning by Andermann, Tobias, Antonelli, Alexandre, Barrett, Russell L, Silvestro, Daniele

“…The reliable mapping of species richness is a crucial step for the identification of areas of high conservation priority, alongside other value and threat…”
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The past and future human impact on mammalian diversity by Andermann, Tobias, Faurby, Søren, Turvey, Samuel T, Antonelli, Alexandre, Silvestro, Daniele

“…To understand the current biodiversity crisis, it is crucial to determine how humans have affected biodiversity in the past. However, the extent of human…”
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Undiscovered bird extinctions obscure the true magnitude of human-driven extinction waves by Cooke, Rob, Sayol, Ferran, Andermann, Tobias, Blackburn, Tim M., Steinbauer, Manuel J., Antonelli, Alexandre, Faurby, Søren

“…Birds are among the best-studied animal groups, but their prehistoric diversity is poorly known due to low fossilization potential. Hence, while many…”
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The origin and evolution of open habitats in North America inferred by Bayesian deep learning models by Andermann, Tobias, Strömberg, Caroline A. E., Antonelli, Alexandre, Silvestro, Daniele

“…Some of the most extensive terrestrial biomes today consist of open vegetation, including temperate grasslands and tropical savannas. These biomes originated…”
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Global Estimation and Mapping of the Conservation Status of Tree Species Using Artificial Intelligence by Silva, Sandro Valerio, Andermann, Tobias, Zizka, Alexander, Kozlowski, Gregor, Silvestro, Daniele

“…Trees are fundamental for Earth's biodiversity as primary producers and ecosystem engineers and are responsible for many of nature's contributions to people…”
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SECAPR-a bioinformatics pipeline for the rapid and user-friendly processing of targeted enriched Illumina sequences, from raw reads to alignments by Andermann, Tobias, Cano, Ángela, Zizka, Alexander, Bacon, Christine, Antonelli, Alexandre

“…Evolutionary biology has entered an era of unprecedented amounts of DNA sequence data, as new sequencing technologies such as Massive Parallel Sequencing (MPS)…”
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A Guide to Carrying Out a Phylogenomic Target Sequence Capture Project by Andermann, Tobias, Torres Jiménez, Maria Fernanda, Matos-Maraví, Pável, Batista, Romina, Blanco-Pastor, José L, Gustafsson, A Lovisa S, Kistler, Logan, Liberal, Isabel M, Oxelman, Bengt, Bacon, Christine D, Antonelli, Alexandre

“…High-throughput DNA sequencing techniques enable time- and cost-effective sequencing of large portions of the genome. Instead of sequencing and annotating…”
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Conceptual and empirical advances in Neotropical biodiversity research by Antonelli, Alexandre, Ariza, María, Albert, James, Andermann, Tobias, Azevedo, Josué, Bacon, Christine, Faurby, Søren, Guedes, Thais, Hoorn, Carina, Lohmann, Lúcia G, Matos-Maraví, Pável, Ritter, Camila D, Sanmartín, Isabel, Silvestro, Daniele, Tejedor, Marcelo, Ter Steege, Hans, Tuomisto, Hanna, Werneck, Fernanda P, Zizka, Alexander, Edwards, Scott V

“…The unparalleled biodiversity found in the American tropics (the Neotropics) has attracted the attention of naturalists for centuries. Despite major advances…”
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IUCNN – Deep learning approaches to approximate species' extinction risk by Zizka, Alexander, Andermann, Tobias, Silvestro, Daniele

“…Aim The Red List (RL) from the International Union for the Conservation of Nature is the most comprehensive global quantification of extinction risk, and…”
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Estimating Age-Dependent Extinction: Contrasting Evidence from Fossils and Phylogenies by Hagen, Oskar, Andermann, Tobias, Quental, Tiago B., Antonelli, Alexandre, Silvestro, Daniele

“…The estimation of diversification rates is one of the most vividly debated topics in modern systematics, with considerable controversy surrounding the power of…”
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Phylogenomics and biogeography of the world's thrushes (Aves, Turdus ): new evidence for a more parsimonious evolutionary history by Batista, Romina, Olsson, Urban, Andermann, Tobias, Aleixo, Alexandre, Ribas, Camila Cherem, Antonelli, Alexandre

“…To elucidate the relationships and spatial range evolution across the world of the bird genus (Aves), we produced a large genomic dataset comprising 2 million…”
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Allele Phasing Greatly Improves the Phylogenetic Utility of Ultraconserved Elements by Andermann, Tobias, Fernandes, Alexandre M., Olsson, Urban, Töpel, Mats, Pfeil, Bernard, Oxelman, Bengt, Aleixo, Alexandre, Faircloth, Brant C., Antonelli, Alexandre

“…Advances in high-throughput sequencing techniques now allow relatively easy and affordable sequencing of large portions of the genome, even for nonmodel…”
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Target sequence capture of Barnadesioideae (Compositae) demonstrates the utility of low coverage loci in phylogenomic analyses by Ferreira, Paola de Lima, Batista, Romina, Andermann, Tobias, Groppo, Milton, Bacon, Christine D., Antonelli, Alexandre

“…[Display omitted] •We explored the effects of missing data on phylogenomic analyses.•Excluding matrices with high amounts of missing data largely affect the…”
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The last of their kind: Is the genus Scutiger (Anura: Megophryidae) a relict element of the paleo-Transhimalaya biota? by Hofmann, Sylvia, Podsiadlowski, Lars, Andermann, Tobias, Matschiner, Michael, Baniya, Chitra B., Litvinchuk, Spartak N., Martin, Sebastian, Masroor, Rafaqat, Yang, Jianhuan, Zheng, Yuchi, Jablonski, Daniel, Schmidt, Joachim

“…[Display omitted] •Phylogeny of Scutiger suggests an origin of the genus in paleo-Tibet.•Himalayan taxa evolved probably on southern edges of paleo-Tibet…”
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iucn_sim: a new program to simulate future extinctions based on IUCN threat status by Andermann, Tobias, Faurby, Søren, Cooke, Robert, Silvestro, Daniele, Antonelli, Alexandre

“…The ongoing environmental crisis poses an urgent need to forecast the who, where and when of future species extinctions, as such information is crucial for…”
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Exploring Paleogene Tibet's warm temperate environments through target enrichment and phylogenetic niche modelling of Himalayan spiny frogs (Paini, Dicroglossidae) by Hofmann, Sylvia, Rödder, Dennis, Andermann, Tobias, Matschiner, Michael, Riedel, Jendrian, Baniya, Chitra B., Flecks, Morris, Yang, Jianhuan, Jiang, Ke, Jianping, Jiang, Litvinchuk, Spartak N., Martin, Sebastian, Masroor, Rafaqat, Nothnagel, Michael, Vershinin, Vladimir, Zheng, Yuchi, Jablonski, Daniel, Schmidt, Joachim, Podsiadlowski, Lars

“…The Cenozoic topographic development of the Himalaya‐Tibet orogen (HTO) substantially affected the paleoenvironment and biodiversity patterns of High Asia…”
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A bioinformatic platform to integrate target capture and whole genome sequences of various read depths for phylogenomics by G. Ribeiro, Pedro, Torres Jiménez, María Fernanda, Andermann, Tobias, Antonelli, Alexandre, Bacon, Christine D., Matos‐Maraví, Pável

“…The increasing availability of short‐read whole genome sequencing (WGS) provides unprecedented opportunities to study ecological and evolutionary processes…”
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Recent and local diversification of Central American understorey palms by Cano, Ángela, Stauffer, Fred W., Andermann, Tobias, Liberal, Isabel M., Zizka, Alexander, Bacon, Christine D., Lorenzi, Harri, Christe, Camille, Töpel, Mats, Perret, Mathieu, Antonelli, Alexandre

“…Aim Central America is largely covered by hyperdiverse, yet poorly understood, rain forests. Understorey palms are diverse components of these forests, but…”
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Phylogenomics of the tropical plant family Ochnaceae using targeted enrichment of nuclear genes and 250+ taxa by Schneider, Julio V., Jungcurt, Tanja, Cardoso, Domingos, Amorim, André Márcio, Töpel, Mats, Andermann, Tobias, Poncy, Odile, Berberich, Thomas, Zizka, Georg

“…Targeted capture of nuclear genes increasingly contributes to unravelling phylogenetic relationships that hitherto remained unresolved because of limitations…”
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