Characterization and phylogenetic analysis of the complete plastid genome of Theobroma bicolor (Malvaceae) from Peru

Characterization and phylogenetic analysis of the complete plastid genome of Theobroma bicolor (Malvaceae) from Peru

Bonpl. 1806 is distributed in the Neotropics from southern Mexico to the Peruvian and Brazilian Amazon. High-throughput sequencing of from Peru (KUELAP2926) resulted in the assembly of its complete plastid genome (GenBank accession number OQ557154). The chloroplast genome of is A + T-rich (62.97%),...

Full description

Saved in:
Bibliographic Details
Published in:Mitochondrial DNA. Part B. Resources Vol. 9; no. 2; pp. 227 - 232
Main Authors: Tineo, Daniel, Calderon, Martha S, Maicelo, Jorge L, Oliva, Manuel, Huamán-Pilco, Ángel F, Ananco, Oswaldo, Bustamante, Danilo E
Format: Journal Article
Language:English
Published: England Taylor & Francis Ltd 01-02-2024
Taylor & Francis Group
Subjects:
Amazonas region
Chloroplasts
Chocolate
Cocoa
Genomes
Inverted repeat
Malvaceae
Mitochondrial DNA
Next-generation sequencing
Peru
Phylogenetics
Phylogeny
plastid genome
RNA polymerase
Theobroma
Theobroma bicolor
Transfer RNA
Malvaceae
plastid genome
Amazonas region
theobroma
Peru
Online Access:Get full text
Tags: Add Tag
No Tags, Be the first to tag this record!
Description
Summary:Bonpl. 1806 is distributed in the Neotropics from southern Mexico to the Peruvian and Brazilian Amazon. High-throughput sequencing of from Peru (KUELAP2926) resulted in the assembly of its complete plastid genome (GenBank accession number OQ557154). The chloroplast genome of is A + T-rich (62.97%), having 160,317 bp in size and containing 130 genes; including a pair of inverted repeat regions (IRs) of 25,462 bp separated by a large single copy region (LSC) of 89,221 bp and a small single copy region (SSC) of 20,172 bp. This plastid genome is similar in length, content, and organization to other members of the genus . Phylogenetic analyses of support its sistership to the clade comprising and . This study may contribute valuable information to the phylogenetic relationships within the genus .
Bibliography:ObjectType-Article-1
SourceType-Scholarly Journals-1
ObjectType-Feature-2
content type line 23
ISSN:2380-2359
2380-2359
DOI:10.1080/23802359.2024.2310134