Search Results - "Alseekh, Saleh"

Ultra-high-performance liquid chromatography high-resolution mass spectrometry variants for metabolomics research by Perez de Souza, Leonardo, Alseekh, Saleh, Scossa, Federico, Fernie, Alisdair R.

“…Ultra-high-performance liquid chromatography high-resolution mass spectrometry (UHPLC–HRMS) variants currently represent the best tools to tackle the…”
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Metabolomics 20 years on: what have we learned and what hurdles remain? by Alseekh, Saleh, Fernie, Alisdair R.

“…Summary The term metabolome was coined in 1998, by analogy to genome, transcriptome and proteome. The first research papers using the terms metabolomics,…”
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The Structure and Function of Major Plant Metabolite Modifications by Wang, Shouchuang, Alseekh, Saleh, Fernie, Alisdair R., Luo, Jie

“…Plants produce a myriad of structurally and functionally diverse metabolites that play many different roles in plant growth and development and in plant…”
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Genome-wide association studies: assessing trait characteristics in model and crop plants by Alseekh, Saleh, Kostova, Dimitrina, Bulut, Mustafa, Fernie, Alisdair R.

“…GWAS involves testing genetic variants across the genomes of many individuals of a population to identify genotype–phenotype association. It was initially…”
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Plant secondary metabolic responses to global climate change: A meta‐analysis in medicinal and aromatic plants by Sun, Yuming, Alseekh, Saleh, Fernie, Alisdair R.

“…Plant secondary metabolites (SMs) play crucial roles in plant‐environment interactions and contribute greatly to human health. Global climate changes are…”
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The style and substance of plant flavonoid decoration; towards defining both structure and function by Alseekh, Saleh, Perez de Souza, Leonardo, Benina, Maria, Fernie, Alisdair R.

“…Over 8000 different flavonoids have been described and a considerable number of new flavonoid structures are being elucidated every year. The advent of…”
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Unravelling the molecular networks that regulate kiwifruit flavor by Fernie, Alisdair R., Alseekh, Saleh

“…This article is a Commentary on Wang et al. (2022), 233: 373–389…”
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Genome assembly of wild tea tree DASZ reveals pedigree and selection history of tea varieties by Zhang, Weiyi, Zhang, Youjun, Qiu, Haiji, Guo, Yafei, Wan, Haoliang, Zhang, Xiaoliang, Scossa, Federico, Alseekh, Saleh, Zhang, Qinghua, Wang, Pu, Xu, Li, Schmidt, Maximilian H-W, Jia, Xinxin, Li, Daili, Zhu, Anting, Guo, Fei, Chen, Wei, Ni, Dejiang, Usadel, Björn, Fernie, Alisdair R., Wen, Weiwei

“…Wild teas are valuable genetic resources for studying domestication and breeding. Here we report the assembly of a high-quality chromosome-scale reference…”
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De Novo Assembly of a New Solanum pennellii Accession Using Nanopore Sequencing by Schmidt, Maximilian H.-W., Vogel, Alexander, Denton, Alisandra K., Istace, Benjamin, Wormit, Alexandra, van de Geest, Henri, Bolger, Marie E., Alseekh, Saleh, Maß, Janina, Pfaff, Christian, Schurr, Ulrich, Chetelat, Roger, Maumus, Florian, Aury, Jean-Marc, Koren, Sergey, Fernie, Alisdair R., Zamir, Dani, Bolger, Anthony M., Usadel, Björn

“…Updates in nanopore technology have made it possible to obtain gigabases of sequence data. Prior to this, nanopore sequencing technology was mainly used to…”
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Mass spectrometry-based metabolomics: a guide for annotation, quantification and best reporting practices by Alseekh, Saleh, Aharoni, Asaph, Brotman, Yariv, Contrepois, Kévin, D’Auria, John, Ewald, Jan, C. Ewald, Jennifer, Fraser, Paul D., Giavalisco, Patrick, Hall, Robert D., Heinemann, Matthias, Link, Hannes, Luo, Jie, Neumann, Steffen, Nielsen, Jens, Perez de Souza, Leonardo, Saito, Kazuki, Sauer, Uwe, Schroeder, Frank C., Schuster, Stefan, Siuzdak, Gary, Skirycz, Aleksandra, Sumner, Lloyd W., Snyder, Michael P., Tang, Huiru, Tohge, Takayuki, Wang, Yulan, Wen, Weiwei, Wu, Si, Xu, Guowang, Zamboni, Nicola, Fernie, Alisdair R.

“…Mass spectrometry-based metabolomics approaches can enable detection and quantification of many thousands of metabolite features simultaneously. However,…”
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Genetic and epigenetic control of the plant metabolome by Hayashi, Koki, Alseekh, Saleh, Fernie, Alisdair R.

“…Plant metabolites are mainly produced through chemical reactions catalysed by enzymes encoded in the genome. Mutations in enzyme‐encoding or transcription…”
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Natural variations in the Sl‐AKR9 aldo/keto reductase gene impact fruit flavor volatile and sugar contents by Li, Xiang, Tieman, Denise, Alseekh, Saleh, Fernie, Alisdair R., Klee, Harry J.

“…SUMMARY The unique flavors of different fruits depend upon complex blends of soluble sugars, organic acids, and volatile organic compounds. 2‐Phenylethanol and…”
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Dissection of the domestication‐shaped genetic architecture of lettuce primary metabolism by Zhang, Weiyi, Alseekh, Saleh, Zhu, Xiang, Zhang, Qinghua, Fernie, Alisdair R., Kuang, Hanhui, Wen, Weiwei

“…Summary Lettuce (Lactuca sativa L.) is an important vegetable crop species worldwide. The primary metabolism of this species is essential for its growth,…”
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Multi-level engineering facilitates the production of phenylpropanoid compounds in tomato by Zhang, Yang, Butelli, Eugenio, Alseekh, Saleh, Tohge, Takayuki, Rallapalli, Ghanasyam, Luo, Jie, Kawar, Prashant G., Hill, Lionel, Santino, Angelo, Fernie, Alisdair R., Martin, Cathie

“…Phenylpropanoids comprise an important class of plant secondary metabolites. A number of transcription factors have been used to upregulate-specific branches…”
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A comprehensive metabolomics and lipidomics atlas for the legumes common bean, chickpea, lentil and lupin by Bulut, Mustafa, Wendenburg, Regina, Bitocchi, Elena, Bellucci, Elisa, Kroc, Magdalena, Gioia, Tania, Susek, Karolina, Papa, Roberto, Fernie, Alisdair R, Alseekh, Saleh

“…Legumes represent an important component of human and livestock diets; they are rich in macro- and micronutrients such as proteins, dietary fibers and…”
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On the regulation and function of secondary metabolism during fruit development and ripening by Tohge, Takayuki, Alseekh, Saleh, Fernie, Alisdair R

“…We review advances in tomato secondary metabolism (carotenoids, polyphenols, volatile organic compounds, and alkaloids) focusing on the use of metabolomics…”
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Domestication of Crop Metabolomes: Desired and Unintended Consequences by Alseekh, Saleh, Scossa, Federico, Wen, Weiwei, Luo, Jie, Yan, Jianbing, Beleggia, Romina, Klee, Harry J., Huang, Sanwen, Papa, Roberto, Fernie, Alisdair R.

“…The majority of the crops and vegetables of today were domesticated from their wild progenitors within the past 12 000 years. Considerable research effort has…”
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Global Analysis of the Role of Autophagy in Cellular Metabolism and Energy Homeostasis in Arabidopsis Seedlings under Carbon Starvation by Avin-Wittenberg, Tamar, Bajdzienko, Krzysztof, Wittenberg, Gal, Alseekh, Saleh, Tohge, Takayuki, Bock, Ralph, Giavalisco, Patrick, Fernie, Alisdair R.

“…Germination and early seedling establishment are developmental stages in which plants face limited nutrient supply as their photosynthesis mechanism is not yet…”
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MicroTom Metabolic Network: Rewiring Tomato Metabolic Regulatory Network throughout the Growth Cycle by Li, Yan, Chen, Yang, Zhou, Lu, You, Shengjie, Deng, Heng, Chen, Ya, Alseekh, Saleh, Yuan, Yong, Fu, Rao, Zhang, Zixin, Su, Dan, Fernie, Alisdair R., Bouzayen, Mondher, Ma, Tao, Liu, Mingchun, Zhang, Yang

“…Tomato (Solanum lycopersicum) is a major horticultural crop worldwide and has emerged as a preeminent model for metabolic research. Although many research…”
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Identification and Mode of Inheritance of Quantitative Trait Loci for Secondary Metabolite Abundance in Tomato by Alseekh, Saleh, Tohge, Takayuki, Wendenberg, Regina, Scossa, Federico, Omranian, Nooshin, Li, Jie, Kleessen, Sabrina, Giavalisco, Patrick, Pleban, Tzili, Mueller-Roeber, Bernd, Zamir, Dani, Nikoloski, Zoran, Fernie, Alisdair R.

“…A large-scale metabolic quantitative trait loci (mQTL) analysis was performed on the well-characterized Solanum pennellii introgression lines to investigate…”
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