Search Results - "Alnasir, Jamie"

Fifteen quick tips for success with HPC, i.e., responsibly BASHing that Linux cluster by Alnasir, Jamie J

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Distributed Computing in a Pandemic by Alnasir, Jamie

“…The current COVID-19 global pandemic caused by the SARS-CoV-2 betacoronavirus has resulted in over a million deaths and is having a grave socio-economic…”
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Intra-Exon Motif Correlations as a Proxy Measure for Mean Per-Tile Sequence Quality Data in RNA-Seq by Alnasir, Jamie J, Shanahan, Hugh P

“…Given the wide variability in the quality of next-generation sequencing data submitted to public repositories, it is essential to identify methods that can…”
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Distributed Computing in a Pandemic: A Review of Technologies available for Tackling COVID-19 by Alnasir, Jamie

“…The current COVID-19 global pandemic caused by the SARS-CoV-2 betacoronavirus has resulted in over a million deaths and is having a grave socio-economic…”
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The application of Hadoop in structural bioinformatics by Alnasir, Jamie J, Shanahan, Hugh P

“…Abstract The paper reviews the use of the Hadoop platform in structural bioinformatics applications. For structural bioinformatics, Hadoop provides a new…”
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A Novel Method to Detect Bias in Short Read NGS Data by Alnasir, Jamie, Shanahan, Hugh P.

“…Detecting sources of bias in transcriptomic data is essential to determine signals of Biological significance. We outline a novel method to detect sequence…”
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Fifteen quick tips for success with HPC, i.e., responsibly BASHing that Linux cluster by Jamie J Alnasir

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The Analysis of High-Throughput Biological Datasets Utilising Distributed Computing by Alnasir, Jamie

“…This thesis explores the analysis of high-throughput biological datasets using distributed computing, particularly sequencing data produced by high-throughput…”
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Investigation into the annotation of protocol sequencing steps in the sequence read archive by Alnasir, Jamie, Shanahan, Hugh P

“…The workflow for the production of high-throughput sequencing data from nucleic acid samples is complex. There are a series of protocol steps to be followed in…”
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Distributed Computing in a Pandemic: A Review of Technologies Available for Tackling COVID-19 by Alnasir, Jamie J

“…ADCAIJ: Advances in Distributed Computing and Artificial Intelligence Journal, 11(1), 9-43 (2022) The current COVID-19 global pandemic caused by the SARS-CoV-2…”
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Ten Simple Rules for Success with HPC, i.e. Responsibly BASHing that Linux Cluster by Alnasir, Jamie J

“…PLoS Comput Biol 17(8): e1009207 (2021) High-performance computing (HPC) clusters are widely used in-house at scientific and academic research institutions…”
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Survey of Information Encoding Techniques for DNA by Heinis, Thomas, Sokolovskii, Roman, Alnasir, Jamie J

“…The yearly global production of data is growing exponentially, outpacing the capacity of existing storage media, such as tape and disk, and surpassing our…”
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DNA Storage Error Simulator: A Tool for Simulating Errors in Synthesis, Storage, PCR and Sequencing by Alnasir, Jamie J, Heinis, Thomas, Carteron, Louis

“…DNA has many valuable characteristics that make it suitable for a long-term storage medium, in particular its durability and high information density. DNA can…”
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