Search Results - "Aldrich, Joshua T."

Tandem mass spectrometry identifies many mouse brain O-GlcNAcylated proteins including EGF domain-specific O-GlcNAc transferase targets by Alfaro, Joshua F, Gong, Cheng-Xin, Monroe, Matthew E, Aldrich, Joshua T, Clauss, Therese R. W, Purvine, Samuel O, Wang, Zihao, Camp, David G. II, Shabanowitz, Jeffrey, Stanley, Pamela, Hart, Gerald W, Hunt, Donald F, Yang, Feng, Smith, Richard D

“…O-linked N-acetylglucosamine (O-GlcNAc) is a reversible posttranslational modification of Ser and Thr residues on cytosolic and nuclear proteins of higher…”
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Evidence supporting dissimilatory and assimilatory lignin degradation in Enterobacter lignolyticus SCF1 by Deangelis, Kristen M, Sharma, Deepak, Varney, Rebecca, Simmons, Blake, Isern, Nancy G, Markilllie, Lye Meng, Nicora, Carrie, Norbeck, Angela D, Taylor, Ronald C, Aldrich, Joshua T, Robinson, Errol W

“…Lignocellulosic biofuels are promising as sustainable alternative fuels, but lignin inhibits access of enzymes to cellulose, and by-products of lignin…”
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Proteogenomic analysis of a thermophilic bacterial consortium adapted to deconstruct switchgrass by D'haeseleer, Patrik, Gladden, John M, Allgaier, Martin, Chain, Patrik S G, Tringe, Susannah G, Malfatti, Stephanie A, Aldrich, Joshua T, Nicora, Carrie D, Robinson, Errol W, Paša-Tolić, Ljiljana, Hugenholtz, Philip, Simmons, Blake A, Singer, Steven W

“…Thermophilic bacteria are a potential source of enzymes for the deconstruction of lignocellulosic biomass. However, the complement of proteins used to…”
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Comparative Community Proteomics Demonstrates the Unexpected Importance of Actinobacterial Glycoside Hydrolase Family 12 Protein for Crystalline Cellulose Hydrolysis by Hiras, Jennifer, Wu, Yu-Wei, Deng, Kai, Nicora, Carrie D, Aldrich, Joshua T, Frey, Dario, Kolinko, Sebastian, Robinson, Errol W, Jacobs, Jon M, Adams, Paul D, Northen, Trent R, Simmons, Blake A, Singer, Steven W

“…Glycoside hydrolases (GHs) are key enzymes in the depolymerization of plant-derived cellulose, a process central to the global carbon cycle and the conversion…”
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Automated immobilized metal affinity chromatography system for enrichment of Escherichia coli phosphoproteome by Qu, Yi, Wu, Si, Zhao, Rui, Zink, Erika, Orton, Daniel J., Moore, Ronald J., Meng, Da, Clauss, Therese R. W., Aldrich, Joshua T., Lipton, Mary S., Paša-Tolić, Ljiljana

“…Enrichment of bacterial phosphopeptides is an essential step prior to bottom‐up mass spectrometry‐based analysis of the phosphoproteome, which is fundamental…”
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Proteomic identification and quantification of S-glutathionylation in mouse macrophages using resin-assisted enrichment and isobaric labeling by Su, Dian, Gaffrey, Matthew J., Guo, Jia, Hatchell, Kayla E., Chu, Rosalie K., Clauss, Therese R.W., Aldrich, Joshua T., Wu, Si, Purvine, Sam, Camp, David G., Smith, Richard D., Thrall, Brian D., Qian, Wei-Jun

“…S-Glutathionylation (SSG) is an important regulatory posttranslational modification on protein cysteine (Cys) thiols, yet the role of specific cysteine…”
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Quantitative Phosphoproteomic Analysis of Soybean Root Hairs Inoculated with Bradyrhizobium japonicum by Nguyen, Tran Hong Nha, Brechenmacher, Laurent, Aldrich, Joshua T., Clauss, Therese R., Gritsenko, Marina A., Hixson, Kim K., Libault, Marc, Tanaka, Kiwamu, Yang, Feng, Yao, Qiuming, Paša-Tolić, Ljiljana, Xu, Dong, Nguyen, Henry T., Stacey, Gary

“…Root hairs are single hair-forming cells on roots that function to increase root surface area, enhancing water and nutrient uptake. In leguminous plants, root…”
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Quantitative Proteomic Profiling of Low-Dose Ionizing Radiation Effects in a Human Skin Model by Hengel, Shawna M, Aldrich, Joshua T, Waters, Katrina M, Pasa-Tolic, Ljiljana, Stenoien, David L

“…To assess responses to low-dose ionizing radiation (LD-IR) exposures potentially encountered during medical diagnostic procedures, nuclear accidents or…”
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Soybean Roots Grown under Heat Stress Show Global Changes in Their Transcriptional and Proteomic Profiles by Valdés-López, Oswaldo, Batek, Josef, Gomez-Hernandez, Nicolas, Nguyen, Cuong T, Isidra-Arellano, Mariel C, Zhang, Ning, Joshi, Trupti, Xu, Dong, Hixson, Kim K, Weitz, Karl K, Aldrich, Joshua T, Paša-Tolić, Ljiljana, Stacey, Gary

“…Heat stress is likely to be a key factor in the negative impact of climate change on crop production. Heat stress significantly influences the functions of…”
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The abundant marine bacterium Pelagibacter simultaneously catabolizes dimethylsulfoniopropionate to the gases dimethyl sulfide and methanethiol by Sun, Jing, Todd, Jonathan D., Thrash, J. Cameron, Qian, Yanping, Qian, Michael C., Temperton, Ben, Guo, Jiazhen, Fowler, Emily K., Aldrich, Joshua T., Nicora, Carrie D., Lipton, Mary S., Smith, Richard D., De Leenheer, Patrick, Payne, Samuel H., Johnston, Andrew W.B., Davie-Martin, Cleo L., Halsey, Kimberly H., Giovannoni, Stephen J.

“…Marine phytoplankton produce ∼10 9  tonnes of dimethylsulfoniopropionate (DMSP) per year 1 , 2 , an estimated 10% of which is catabolized by bacteria through…”
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Changes in translational efficiency is a dominant regulatory mechanism in the environmental response of bacteria by Taylor, Ronald C, Webb Robertson, Bobbie-Jo M, Markillie, Lye Meng, Serres, Margrethe H, Linggi, Bryan E, Aldrich, Joshua T, Hill, Eric A, Romine, Margaret F, Lipton, Mary S, Wiley, H Steven

“…To understand how cell physiological state affects mRNA translation, we used Shewanella oneidensis MR-1 grown under steady state conditions at either 20% or…”
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Identification of soybean proteins from a single cell type: The root hair by Brechenmacher, Laurent, Nguyen, Tran Hong Nha, Hixson, Kim, Libault, Marc, Aldrich, Joshua, Pasa-Tolic, Ljiljana, Stacey, Gary

“…Root hairs (RH) are a terminally differentiated single cell type, mainly involved in water and nutrient uptake from the soil. The soybean RH cell represents an…”
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Comparative Community Proteomics Demonstrates the Unexpected Importance of Actinobacterial Glycoside Hydrolase Family 12 Protein for Crystalline Cellulose Hydrolysis by Hiras, Jennifer, Wu, Yu -Wei, Deng, Kai, Nicora, Carrie D., Aldrich, Joshua T., Frey, Dario, Kolinko, Sebastian, Robinson, Errol W., Jacobs, Jon M., Adams, Paul D., Northen, Trent R., Simmons, Blake A., Singer, Steven W.

“…Glycoside hydrolases (GHs) are key enzymes in the depolymerization of plant-derived cellulose, a process central to the global carbon cycle and the conversion…”
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Soybean Roots Grown under Heat Stress Show Global Changes in Their Transcriptional and Proteomic Profiles by Valdés-López, Oswaldo, Batek, Josef, Gomez-Hernandez, Nicolas, Nguyen, Cuong T., Isidra-Arellano, Mariel C., Zhang, Ning, Joshi, Trupti, Xu, Dong, Hixson, Kim K., Weitz, Karl K., Aldrich, Joshua T., Paša-Tolić, Ljiljana, Stacey, Gary

“…Heat stress is likely to be a key factor in the negative impact of climate change on crop production. Heat stress significantly influences the functions of…”
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Quantitative phosphoproteomics identifies filaggrin and other targets of ionizing radiation in a human skin model by Yang, Feng, Waters, Katrina M., Webb-Robertson, Bobbie-Jo, Sowa, Marianne B., von Neubeck, Claere, Aldrich, Josh T., Meng Markillie, Lye, Wirgau, Rachel M., Gritsenko, Marina A., Zhao, Rui, Camp II, David G., Smith, Richard D., Stenoien, David L.

“…:  Our objective here was to perform a quantitative phosphoproteomic study on a reconstituted human skin tissue to identify low‐ and high‐dose ionizing…”
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Evidence supporting dissimilatory and assimilatory lignin degradation in Enterobacter lignolyticus SCF1 by DeAngelis, Kristen M., Sharma, Deepak, Varney, Rebecca, Simmons, Blake, Isern, Nancy G., Markilllie, Lye Meng, Nicora, Carrie, Norbeck, Angela D., Taylor, Ronald C., Aldrich, Joshua T., Robinson, Errol W.

“…Lignocellulosic biofuels are promising as sustainable alternative fuels, but lignin inhibits access of enzymes to cellulose, and by-products of lignin…”
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Changes in translational efficiency is a dominant regulatory mechanism in the environmental response of bacteriaElectronic supplementary information (ESI) available: Supplementary methods, supplementary data, supplementary Fig. S1-S4 and supplementary Tables S1-S5. See DOI: 10.1039/c3ib40120k by Taylor, Ronald C, Webb Robertson, Bobbie-Jo M, Markillie, Lye Meng, Serres, Margrethe H, Linggi, Bryan E, Aldrich, Joshua T, Hill, Eric A, Romine, Margaret F, Lipton, Mary S, Wiley, H. Steven

“…To understand how cell physiological state affects mRNA translation, we used Shewanella oneidensis MR-1 grown under steady state conditions at either 20% or…”
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Corrigendum: The abundant marine bacterium Pelagibacter simultaneously catabolizes dimethylsulfoniopropionate to the gases dimethyl sulfide and methanethiol by Sun, Jing, Todd, Jonathan D, Thrash, J Cameron, Qian, Yanping, Qian, Michael C, Temperton, Ben, Guo, Jiazhen, Fowler, Emily K, Aldrich, Joshua T, Nicora, Carrie D, Lipton, Mary S, Smith, Richard D, De Leenheer, Patrick, Payne, Samuel H, Johnston, Andrew W B, Davie-Martin, Cleo L, Halsey, Kimberly H, Giovannoni, Stephen J

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Correction: Corrigendum: The abundant marine bacterium Pelagibacter simultaneously catabolizes dimethylsulfoniopropionate to the gases dimethyl sulfide and methanethiol by Sun, Jing, Todd, Jonathan D., Thrash, J. Cameron, Qian, Yanping, Qian, Michael C., Temperton, Ben, Guo, Jiazhen, Fowler, Emily K., Aldrich, Joshua T., Nicora, Carrie D., Lipton, Mary S., Smith, Richard D., De Leenheer, Patrick, Payne, Samuel H., Johnston, Andrew W.B., Davie-Martin, Cleo L., Halsey, Kimberly H., Giovannoni, Stephen J.

“…Nature Microbiology 1, 16065 (2016); published 16 May 2016; corrected 3 October 2016 In the original version of this Letter, the funding source was omitted…”
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